Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05313 and BPUM_3127

See Amino acid alignment / Visit BSNT_05313 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence dna-align/BSNT_05313___hisG.1.24716.seq
#    -bsequence dna-align/BPUM_3127___hisG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05313___hisG-BPUM_3127___hisG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05313___hisG-BPUM_3127___hisG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05313___hisG
# 2: BPUM_3127___hisG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 658
# Identity:     483/658 (73.4%)
# Similarity:   483/658 (73.4%)
# Gaps:          50/658 ( 7.6%)
# Score: 1804.0
# 
#
#=======================================

BSNT_05313___      1 ------------------ATGGCGATGCCAAAGGGCCGGATATTTGAAGA     32
                                       ||||||||||||||||||||.|||||||||||
BPUM_3127___h      1 ATGGGTAAAGTGTTGACGATGGCGATGCCAAAGGGCCGAATATTTGAAGA     50

BSNT_05313___     33 AGCGGCAGGGCTGCTGAGGCAGGCAGGCTA-CAGGCTCCCTGAGGAGTTT     81
                     .||.|||||||||.|.||||||||.||.|| || .||.||.|||||.||.
BPUM_3127___h     51 GGCCGCAGGGCTGTTAAGGCAGGCGGGTTATCA-ACTGCCAGAGGAATTC     99

BSNT_05313___     82 GAAGATTCGAGAAAACTGATCATCGATGTGCCGGAGGAAAATCTTCGTTT    131
                     ||.|||||.|||||..|.|||||.|||||.|||||.||||..||.||.||
BPUM_3127___h    100 GAGGATTCAAGAAAGTTAATCATTGATGTACCGGAAGAAAGCCTCCGCTT    149

BSNT_05313___    132 CATATTAGCAAAGCCGATGGACGTAACCACGTATGTGGAGCATGGCGTGG    181
                     .||.|||||.||.||.|||||.||.||.||.|||||.|||||.||.||.|
BPUM_3127___h    150 TATTTTAGCGAAACCAATGGATGTGACGACTTATGTAGAGCACGGTGTTG    199

BSNT_05313___    182 CAGACGTCGGAATTGCGGGCAAGGATGTCATGCTGGAGGAGGAACGCGAT    231
                     |.||.||.||.|||||.||.||||||||||||||.||.||.|..||.|||
BPUM_3127___h    200 CCGATGTGGGCATTGCAGGGAAGGATGTCATGCTCGAAGAAGCTCGTGAT    249

BSNT_05313___    232 GTGTATGAGGTACTGGATTTAAAAATCAGCAAATGCCACTTAGCTGTCGC    281
                     |||||.|||||.||.||||||||.|||||.||||||||.|||||.||.||
BPUM_3127___h    250 GTGTACGAGGTGCTTGATTTAAACATCAGTAAATGCCATTTAGCAGTTGC    299

BSNT_05313___    282 CGGACTTCC-GAATACAGACTGGAGCGGCGTAGCGCCAAGAATCGCGACA    330
                     .|||.|.|| |.|..||| ||||.|.||.||.|||||..|..|.||.|||
BPUM_3127___h    300 TGGATTGCCAGGAGCCAG-CTGGGGTGGTGTCGCGCCGCGTGTGGCCACA    348

BSNT_05313___    331 AAGTATCCGAATGTGG---CTTCCAGTTATTTCAGAGAGCAGGGAGAACA    377
                     |||||.||.|||||.|   |||||   |||||.||||||||.||.||.||
BPUM_3127___h    349 AAGTACCCAAATGTCGCATCTTCC---TATTTTAGAGAGCAAGGTGAGCA    395

BSNT_05313___    378 AGTCGAGATCATTAAGCTCAACGGTTCAATTGAACTGGCTCCGCTCATTG    427
                     |||.||||||||||||||.||.|||||.||||||.|.||.||||||||.|
BPUM_3127___h    396 AGTAGAGATCATTAAGCTGAATGGTTCCATTGAATTAGCACCGCTCATCG    445

BSNT_05313___    428 GGCTTGCAGATCGGATAGTGGACATTGTTTCCACAGGACAGACGCTGAAA    477
                     |.||.||.|||||.||.||.||.|||||.||.|||||.||.||.||.||.
BPUM_3127___h    446 GACTCGCCGATCGTATCGTTGATATTGTCTCTACAGGTCAAACACTTAAG    495

BSNT_05313___    478 GAAAATGGGCTTGTTGAAACGGAGCACATTTGTGACATTACGTCTCGCTT    527
                     |||||.||.|||||||||||||||||.|||||||||||||||||.||.||
BPUM_3127___h    496 GAAAACGGTCTTGTTGAAACGGAGCATATTTGTGACATTACGTCACGGTT    545

BSNT_05313___    528 TATTGTCAACCCGGTAAGCTATCGCATGAAAGACGATGTGATTGACGAAA    577
                     |||.|||||.||.||.||||||||.|||||.||.|..||||||||.||||
BPUM_3127___h    546 TATAGTCAATCCTGTGAGCTATCGGATGAAGGATGCGGTGATTGATGAAA    595

BSNT_05313___    578 TGGCATCCCGCCT-------ATCTCTCGTTGTGGAAGGAGAGACGGCAAA    620
                     ||||....|||||       |||       .|.|||||.||    |.|||
BPUM_3127___h    596 TGGCGCAGCGCCTTGCAAGAATC-------ATTGAAGGGGA----GGAAA    634

BSNT_05313___    621 ----ATGA    624
                         ||||
BPUM_3127___h    635 CATCATGA    642


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