Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05590 and BPUM_3132
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_05590___ywnA.1.24716.seq
# -bsequence dna-align/BPUM_3132.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05590___ywnA-BPUM_3132.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05590___ywnA-BPUM_3132.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05590___ywnA
# 2: BPUM_3132
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 480
# Identity: 253/480 (52.7%)
# Similarity: 253/480 (52.7%)
# Gaps: 129/480 (26.9%)
# Score: 559.0
#
#
#=======================================
BSNT_05590___ 1 ATG---ATTAACAGCCGTCTTGCTGTTGCCATTCATATTTTATCCCTCAT 47
||| ||.|.||||.|..||.||||.||..|.||||||.|..||.|..|
BPUM_3132 1 ATGAAAATCAGCAGCAGATTTACTGTCGCTGTCCATATTCTGGCCTTGCT 50
BSNT_05590___ 48 CTCGATGGATGAAAAAACATC--TTCAGAAATC-------ATTGCAGACA 88
.||..| |||||||..||| |.||||.||| ||.||.|..|
BPUM_3132 51 ATCACT---TGAAAAAGGATCATTACAGACATCTGAGGATATCGCGGGAA 97
BSNT_05590___ 89 GTGTCAACACGAATCCGGTAGTTGTGCGAAGAATGATCAGCCTGCTGAAA 138
||||.||.||.||.||.||.|||.|.||..|.||.||.||.....|.|||
BPUM_3132 98 GTGTGAATACAAACCCAGTTGTTATCCGCCGGATTATGAGTAAATTAAAA 147
BSNT_05590___ 139 AAAGCTG--ATATTCTCACATCACGCGCC---------GGGGTGC-CGGG 176
|||||.| .||.||||| |||.|.| |.|||.| |.|.
BPUM_3132 148 AAAGCAGGCCTAATCTCA----ACGAGTCTTGGTAAAGGTGGTTCTCAGC 193
BSNT_05590___ 177 TGCAAGCCTCA---AAAA--AGATCCTGC----TGATATTTCT----CTT 213
|| |.||.|| ||.| |||||..|| ||||.|.|.| |..
BPUM_3132 194 TG--AACCGCAGTGAAGACGAGATCACGCTACTTGATGTGTATAAAGCGG 241
BSNT_05590___ 214 TTAGAAGTGTACCG-GGCTGTCCAAAAGCAAGAAGAACTCTTTGCGGTTC 262
|| |||||| | ||.|| |.|.||||.|.|||....|.|
BPUM_3132 242 TT-GAAGTG----GTGGATG---------AGGGAGAATTGTTTCAAATCC 277
BSNT_05590___ 263 ATGAAAACCCGAATCCGAAATGTCCGGTAGGGAAAAAAATTCAGAACGCT 312
||||||.|||.|||||..|.||||||.|.||...|||.|||| |.|||
BPUM_3132 278 ATGAAAGCCCCAATCCTGACTGTCCGATCGGTGCAAATATTC---AAGCT 324
BSNT_05590___ 313 CTGGATGAAACGTTTGAAA--GTGTG-------CAAAGAGCGATGGA--- 350
.||..||| ||| || .|||| |||||.||||||||
BPUM_3132 325 GTGCTTGA---GTT---AATCTTGTGCCGCGCTCAAAGTGCGATGGAGCA 368
BSNT_05590___ 351 ---------------------AAATGAACTGGCAA-GCA------AGTCA 372
||.|||||| || ||| |.|||
BPUM_3132 369 AGTGCTTGCTGAGATCAAATTAAGTGAACT---AACGCAGGTGTTAATCA 415
BSNT_05590___ 373 TTAAAAGATGTTATGAATCATCTCTTTTAA 402
||||.||...||||
BPUM_3132 416 --AAAAAATTGGATGA-------------- 429
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