Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05332 and BPUM_3140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence dna-align/BSNT_05332___yvoA.1.24716.seq
# -bsequence dna-align/BPUM_3140.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05332___yvoA-BPUM_3140.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05332___yvoA-BPUM_3140.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05332___yvoA
# 2: BPUM_3140
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity: 493/806 (61.2%)
# Similarity: 493/806 (61.2%)
# Gaps: 154/806 (19.1%)
# Score: 1343.5
#
#
#=======================================
BSNT_05332___ 1 ATGAATATCAATAAACAATCGCCTATTCCGATTTATTATCAGATTATGGA 50
|||..|||..||||.||.||.|||||||||||.||..|||||||||||||
BPUM_3140 1 ATGTTTATTGATAAGCAGTCACCTATTCCGATGTACCATCAGATTATGGA 50
BSNT_05332___ 51 GCAATTAAAAACCCAAATTAAGAACGGAGAGCT--GCAGCCGGATATGC- 97
|.|.||.||||..||.||||||.|.||| |..| ||| ||.|||| |
BPUM_3140 51 GAACTTGAAAAAACAGATTAAGGATGGA-ACATTAGCA-CCTGATA--CA 96
BSNT_05332___ 98 CTC-TTCCTTCCGAGCGCGAATATGCCGAACAATTCGGGATCAGCCGGAT 146
||| |||||||.||..|.|||||||||||||..||.||.||.||.||.||
BPUM_3140 97 CTCATTCCTTCTGAAAGAGAATATGCCGAACGCTTTGGTATAAGTCGAAT 146
BSNT_05332___ 147 GACAGTTCGCCAGGCGCTT-TCTAATTTAGTTAATGAAGGCTTGCTCTAT 195
|||.||..|.||.|| ||| ||.||..|.||.||.|||||.|...|.|||
BPUM_3140 147 GACTGTCAGACAAGC-CTTATCGAACCTCGTGAACGAAGGATATTTGTAT 195
BSNT_05332___ 196 CGCCTGAAAGGACGGGGCACCTTTGTCAGCAAGCCAAAAATGGAACAAGC 245
||.|..||||||...|||||||||||.|||.||..||||.|.|||||..|
BPUM_3140 196 CGACAAAAAGGAAAAGGCACCTTTGTGAGCCAGAAAAAATTTGAACAGCC 245
BSNT_05332___ 246 ACTTCAAGGGCTGACAAGCTTTACCGAGGATATGAAAAG-CCGCGGGATG 294
.||||||||..|.|||||||||||.||||||||| .| |.|||.|.|.
BPUM_3140 246 GCTTCAAGGCTTAACAAGCTTTACAGAGGATATG---CGTCAGCGTGGTC 292
BSNT_05332___ 295 ACACCGGGC----AGCAGGCTCATTGATTAT----------------CAG 324
.|||| || ||||.|||.|||||||.| |||
BPUM_3140 293 TCACC--GCTTCAAGCAAGCTGATTGATTTTAAAAAAACCGTTTGTCCAG 340
BSNT_05332___ 325 ----------------CTTATTGATTCAACTGAGGAGCTC-----GCG-- 351
|||| ||||| ||| |||
BPUM_3140 341 AGCACTTGCTACCTGTCTTA------CAACT------CTCAAATGGCGAT 378
BSNT_05332___ 352 GCTATATTAGGCTGCGGGCACCCCTCCTCTATCCATAAAATCACTCGGGT 401
|||||||| |.||.|||..|||.|
BPUM_3140 379 GCTATATT---------------------------TGAACTCAAACGGAT 401
BSNT_05332___ 402 GCGGCTGGCAAATGATATTCCAATGGCGATTGA---GTCCTCACATATTC 448
.||.||.||.||||||...||||||||.||||| |..|| ||||.|
BPUM_3140 402 ACGTCTCGCGAATGATGAACCAATGGCAATTGAAACGAGCT---ATATCC 448
BSNT_05332___ 449 CGTTTG-AGC--TTGCGGGTGAATTGAAC----GAATCGCATTTTCAGTC 491
| || ||| ||||.||.| |||.||| ||| || |||.|.|.
BPUM_3140 449 C---TGAAGCATTTGCAGGAG-ATTTAACAAGGGAA---CA-TTTAACTG 490
BSNT_05332___ 492 G-TCGATCTATGATCATATTGAAAGG-TACAACAG--CATACCGATTTCC 537
| ||.||.||||| ||||..|.||| |..||||| |.|| |.|||.|.
BPUM_3140 491 GCTCTATATATGA--ATATATAGAGGCTCAAACAGGCCTTA-CAATTGCT 537
BSNT_05332___ 538 CGTGCAAAACAGGAGCTTG-AGCCAAGCGCTGCCACCACGGAAGAAGCGA 586
|.|||||||||.||||||| |||.|| .|.|||..|.|..||||||||
BPUM_3140 538 CATGCAAAACAAGAGCTTGAAGCGAA-TGTTGCTTCAAAAGAAGAAGC-- 584
BSNT_05332___ 587 ACATTCTTGGTA-----TTCAAAAGG-GAGCGCCTGTCCTATTAATCAAA 630
||| |.||.|| |||||.||| || .||.||.||.|.||||..|
BPUM_3140 585 ACA--CGTGCTATCTATTTCAACAGGTGA--TCCCGTGCTCTCAATCGCA 630
BSNT_05332___ 631 CGAACAACATATCTGCAGAACGGAACTGCTTTTGAGCATGCAAAATCTGT 680
.||||.||.|||.|.|||||.|....|.|.|||||..|||.....||.||
BPUM_3140 631 AGAACGACTTATTTTCAGAATGATGTTCCATTTGAATATGTCCTTTCCGT 680
BSNT_05332___ 681 ATACAGAGGCGACCGTTATA----CATTTGTCCACTATATGGATCGTCTT 726
.||.|||||.||.|||||.| ||||..|.|| |||||..|
BPUM_3140 681 TTATAGAGGGGATCGTTACAAGCTCATTCATACA----ATGGAAAG---- 722
BSNT_05332___ 727 TCATAA 732
||||
BPUM_3140 723 --ATAA 726
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