Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05349 and BPUM_3148
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:57
# Commandline: needle
# -asequence dna-align/BSNT_05349___uvrB.1.24716.seq
# -bsequence dna-align/BPUM_3148___uvrB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05349___uvrB-BPUM_3148___uvrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05349___uvrB-BPUM_3148___uvrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05349___uvrB
# 2: BPUM_3148___uvrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2005
# Identity: 1550/2005 (77.3%)
# Similarity: 1550/2005 (77.3%)
# Gaps: 38/2005 ( 1.9%)
# Score: 5958.5
#
#
#=======================================
BSNT_05349___ 1 GTGAAAGATCGCTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCA 50
||||..||.||||||||.|||||.||.||.|||||||||||.||||||||
BPUM_3148___u 1 GTGAGTGACCGCTTTGAATTAGTTTCTAACTATCAGCCCCAAGGAGATCA 50
BSNT_05349___ 51 GCCGAAAGCCATTGAAAAGCTTGTAAAAGGAATTCAGGAGGGCAAGAAGC 100
||||||.||.||||||||||||||..|.||.||.||..||||.||..|||
BPUM_3148___u 51 GCCGAAGGCAATTGAAAAGCTTGTGGAGGGGATCCATCAGGGGAAACAGC 100
BSNT_05349___ 101 ATCAGACTCTGCTGGGTGCGACAGGAACTGGGAAA-ACATTTACGGTGTC 149
||||.||.|||.|.|||||.|||||.|| |||||| ||.|||||.||.||
BPUM_3148___u 101 ATCAAACGCTGTTAGGTGCTACAGGTAC-GGGAAAGACCTTTACTGTATC 149
BSNT_05349___ 150 TAATTTGATTAAAGAAGTCAATAAGCCGACTCTCGTGATTGCCCATAACA 199
.|||.|||||||||||||.||.||.|||||.||.||.|||||.|||||.|
BPUM_3148___u 150 CAATCTGATTAAAGAAGTGAACAAACCGACACTTGTCATTGCGCATAATA 199
BSNT_05349___ 200 AAACCCTTGCTGGACAGCTTTACAGTGAGTTCAAGGAATTTTTTCCGAAC 249
|.||.|||||.||.|||||.|||||.|||||||||||||||||||||||.
BPUM_3148___u 200 AGACACTTGCCGGTCAGCTATACAGCGAGTTCAAGGAATTTTTTCCGAAT 249
BSNT_05349___ 250 AATGCTGTCGAGTATTTTGTCAGCTACTATGATTATTATCAGCCGGAGGC 299
|||||||||||.||||||||.||.||||||||||||||.||.||.|||||
BPUM_3148___u 250 AATGCTGTCGAATATTTTGTAAGTTACTATGATTATTACCAACCAGAGGC 299
BSNT_05349___ 300 GTATGTGCCTCAAACGGATACATTTATAGAGAAAGACGCTAGTATTAATG 349
||||||||||||.||||||||||||||.||.||.||.||.||.||.||||
BPUM_3148___u 300 GTATGTGCCTCAGACGGATACATTTATTGAAAAGGATGCCAGCATCAATG 349
BSNT_05349___ 350 ATGAAATTGATAAACTGAGACACTCCGCCACATCAGCTTTGTTTGAGCGC 399
||||.||||||||.||||||||||||||.||.||..|.||.||||||||.
BPUM_3148___u 350 ATGAGATTGATAAGCTGAGACACTCCGCTACGTCCTCGTTATTTGAGCGG 399
BSNT_05349___ 400 AGAGATGTCATTATTATTGCGAGTGTGTCTTGTATATACGGCCTCGGTTC 449
|||||||||||.||.|||||.|||||.||.|||||.||.|||.|.|||||
BPUM_3148___u 400 AGAGATGTCATCATCATTGCCAGTGTCTCCTGTATTTATGGCTTAGGTTC 449
BSNT_05349___ 450 GCCTGAGGAATACCGGGAAATGGTCGTGTCACTGCGGACTGAAATGGAAA 499
|||.|||||||||||.||..|.||..||||..|.||.|||||||||||.|
BPUM_3148___u 450 GCCAGAGGAATACCGAGAGCTTGTGCTGTCTTTACGTACTGAAATGGAGA 499
BSNT_05349___ 500 TTGAGCGCAATGAGCTGCTCAGAAAACTTGTAGACATCCAATATGCCCGC 549
||||.||||||.||||.||..|.||.||.||.|||||.||.|||.|.||.
BPUM_3148___u 500 TTGAACGCAATCAGCTTCTACGTAAGCTGGTGGACATTCAGTATTCTCGT 549
BSNT_05349___ 550 AACGATATCGACTTTCAGCGCGGTACATTTCGTGTGCGCGGGGATGTAGT 599
||.|||||.||.|||||||||||.||.||.||.||.||.||.||.||.||
BPUM_3148___u 550 AATGATATAGATTTTCAGCGCGGAACCTTCCGAGTACGAGGAGACGTCGT 599
BSNT_05349___ 600 GGAAATCTTTCCGGCATCCCGTGATGAGCATTGTATCAGAGTTGAATTTT 649
.|||||.|||||.||.||.|||||||||||||||||||||||.||.||||
BPUM_3148___u 600 TGAAATTTTTCCTGCTTCACGTGATGAGCATTGTATCAGAGTGGAGTTTT 649
BSNT_05349___ 650 TCGGTGACGAAATCGAACGGATTCGGGAAGTGGATGCGCTGACAGGAGAA 699
|||||||.|||||.|||||.|||||.|||||||||||.|||||.||||||
BPUM_3148___u 650 TCGGTGATGAAATTGAACGTATTCGAGAAGTGGATGCACTGACTGGAGAA 699
BSNT_05349___ 700 ATTCTCGGCGACCGAGATCATGTTGCGATTTTCCCGGCATCCCACTTCGT 749
||.|||||.||.||.||.|||||.||.||||||||.|||||.||||||||
BPUM_3148___u 700 ATACTCGGTGATCGTGAACATGTGGCTATTTTCCCAGCATCTCACTTCGT 749
BSNT_05349___ 750 AACGCGGGCCGAGAAAATGGAGAAGGCGATTCAAAATATCGAGAAGGAGC 799
.||..|.|..||.||||||||.||.||||||...|||||.||..|.||||
BPUM_3148___u 750 CACTAGAGAAGAAAAAATGGAAAAAGCGATTGTTAATATTGAACAAGAGC 799
BSNT_05349___ 800 TTGAGGAGCAGCT-GAAGGTCATGC----ACGAAAACGGAAAGCTCCTTG 844
||||||||||||| ||| |.|| | ||.||.|||||..|.||.|
BPUM_3148___u 800 TTGAGGAGCAGCTCGAA----AAGCTTCGA-GATAATGGAAAATTGCTAG 844
BSNT_05349___ 845 AAGCGCAGCGTTTAGAGCAGCGGACAAGATATGATCTTGAAATGATGCGT 894
||||.|||||..|.||||||||||||||||||||.|||||.||||||.|.
BPUM_3148___u 845 AAGCACAGCGCCTTGAGCAGCGGACAAGATATGACCTTGAGATGATGAGA 894
BSNT_05349___ 895 GAAATGGGTTTCTGCTCCGGCATCGAGAACTATTCAAGACATTTGACTCT 944
||||||||.||.||.||.||.||||||||.||.|||||||||.||||..|
BPUM_3148___u 895 GAAATGGGCTTTTGTTCAGGAATCGAGAATTACTCAAGACATCTGACCTT 944
BSNT_05349___ 945 GCGGCCTCCAGGTTCAACGCCGTATACGCTTCTTGATTATTTCCCAGACG 994
|||.|||||.||||||||.||.|||||..|.|||||||||||||||||.|
BPUM_3148___u 945 GCGTCCTCCTGGTTCAACCCCTTATACATTGCTTGATTATTTCCCAGATG 994
BSNT_05349___ 995 ATTTTATGATCGTGGTGGATGAGTCGCATGTGACAATTCCCCAGGTGCGC 1044
||||||||||.||.||.|||||||||||||||||..|.||.||..|.|||
BPUM_3148___u 995 ATTTTATGATTGTTGTCGATGAGTCGCATGTGACGGTCCCGCAAATCCGC 1044
BSNT_05349___ 1045 GGCATGTTTAACGGAGACCAGGCGCGGAAACAGGTGCTCGTGGATCACGG 1094
|..||||..|||||.|||||.||..|.||.||.|||.|.||.||||||||
BPUM_3148___u 1045 GCGATGTACAACGGGGACCAAGCAAGAAAGCAAGTGTTGGTTGATCACGG 1094
BSNT_05349___ 1095 CTTCCGGCTTCCATCAGCGCTTGATAACCGTCCGCTTCGTTTTGAGGAAT 1144
.|||||.||.||.|||||.|||||||||.|.|||||....|||||.||.|
BPUM_3148___u 1095 ATTCCGTCTGCCTTCAGCACTTGATAACAGACCGCTCACCTTTGATGAGT 1144
BSNT_05349___ 1145 TTGAAAAGCATATGCACAATATCGTGTATGTATCCGCAACACCAGGGCCG 1194
|||||||||||||..|..||||.|||.|||||||.||.||.||.||.||.
BPUM_3148___u 1145 TTGAAAAGCATATCAATCATATTGTGCATGTATCTGCCACTCCGGGTCCT 1194
BSNT_05349___ 1195 TACGAGATTGAACATA---CAGATGAAATGGTCGAACAGATCATTCGTCC 1241
||.|||.||||..|.| ||||.| |.||.|||||.||.||||||||
BPUM_3148___u 1195 TATGAGCTTGAGAAAACCCCAGAGG---TTGTGGAACAAATTATTCGTCC 1241
BSNT_05349___ 1242 GACGGGGCTTCTTGACCCGCTTATTGACGTCCGTCCAATCGAAGGTCAGA 1291
.||.||..|.|||||.||..|||||||.||.||||||||.||||||||.|
BPUM_3148___u 1242 AACAGGTTTACTTGATCCAATTATTGAAGTGCGTCCAATTGAAGGTCAAA 1291
BSNT_05349___ 1292 TTGACGACTTGATCGGCGAAATTCAAGCAAGAATCGAGCGAAATGAACGG 1341
||||.|||||.||.||.||||||||.||..|.||.|||..||||||.||.
BPUM_3148___u 1292 TTGATGACTTAATTGGAGAAATTCATGCGCGGATTGAGAAAAATGAGCGT 1341
BSNT_05349___ 1342 GTGCTTGTGACAACTTTGACGAAGAAGATGTCAGAGGATCTGACCGATTA 1391
|||||.|||||.||..||||||||||.|||||.|||||||||||.|||||
BPUM_3148___u 1342 GTGCTCGTGACGACGCTGACGAAGAAAATGTCTGAGGATCTGACAGATTA 1391
BSNT_05349___ 1392 TTTAAAGGAAATCGGCATTAAAGTAAACTATCTGCATTCTGAAATCAAGA 1441
||||||.||.||.||.||.||.||.||.|||||||||||.|||||.||||
BPUM_3148___u 1392 TTTAAAAGAGATTGGAATCAAGGTCAATTATCTGCATTCAGAAATTAAGA 1441
BSNT_05349___ 1442 CGCTTGAACGGATTGAAATTATCCGCGACCTGCGCCTTGGCAAGTACGAT 1491
|.|||||.||||||||.|||||.|||||..|.|||||.||.||.||.|||
BPUM_3148___u 1442 CCCTTGAGCGGATTGAGATTATTCGCGATTTACGCCTCGGAAAATATGAT 1491
BSNT_05349___ 1492 GTGCTTGTCGGCATCAACCTGCTGAGGGAAGGTTTGGACATTCCCGAAGT 1541
||.|||||.||.||||||||.||..|.|||||..||||.|||||.||.||
BPUM_3148___u 1492 GTACTTGTGGGAATCAACCTTCTTCGTGAAGGACTGGATATTCCAGAGGT 1541
BSNT_05349___ 1542 ATCCCTTGTTGCGATTTTGGATGCGGATAAGGAAGGTTTCCTTCGTTCGG 1591
.||.|||||..|||||||.|||||.|||||.||.||.|||.|.||.||.|
BPUM_3148___u 1542 GTCGCTTGTGACGATTTTAGATGCAGATAAAGAGGGCTTCTTACGCTCTG 1591
BSNT_05349___ 1592 AGCGGTCGCTGATCCAGACCATCGGACGGGCAGCGAGAAATGCGGAAGGC 1641
|..|.||.||.||||||||.||.||.|||||||||||||||.|.||||||
BPUM_3148___u 1592 AAAGATCCCTTATCCAGACGATTGGCCGGGCAGCGAGAAATTCAGAAGGC 1641
BSNT_05349___ 1642 CGCGTCATTATGTACGCCGATAAAATAACGAAGTCTATGGAAATTGCGAT 1691
||.|||||||||||.||.||||||||.||.||.||.|||||.||||||||
BPUM_3148___u 1642 CGGGTCATTATGTATGCAGATAAAATGACCAAATCAATGGATATTGCGAT 1691
BSNT_05349___ 1692 TAATGAAACAAAACGCCGCCGCGAGCAGCAGGAGCGGTTTAATGAAGAGC 1741
|.|.|||||.||.||..|.||.||||||||.|||...|.|||||||.|..
BPUM_3148___u 1692 TCAAGAAACGAAGCGAAGACGAGAGCAGCAAGAGGCATATAATGAAAAAT 1741
BSNT_05349___ 1742 ACGGCATTACGCCGAAAACGATAAATAAAGAAATTCGCGATGTCATTCGT 1791
|.||.|||||.|||.||||.||..||||..|||||.|.||||.||||...
BPUM_3148___u 1742 ATGGAATTACACCGCAAACCATCCATAAGAAAATTAGAGATGCCATTAAA 1791
BSNT_05349___ 1792 GCCACAGTAGCAGCTGAGGATA-------AAGCG---GAATACAAAACAA 1831
||.||| |.|||| ||.|| |||||..||||||
BPUM_3148___u 1792 GCAACA----------AAGATACATGAAGAATCGGAAGAATATGAAACAA 1831
BSNT_05349___ 1832 AAGCCGCGCCGAAGCTGTCGAAAATGACGAAGAAAGAACGCCAGAAAGTC 1881
|.||.||.||.||||||||.|||||||..||.||||||||..|.|||||.
BPUM_3148___u 1832 ATGCAGCACCAAAGCTGTCAAAAATGAGCAAAAAAGAACGAGAAAAAGTG 1881
BSNT_05349___ 1882 GTTGAACAGATGGAGCATGAAATGAAGGAAGCCGCCAAGGCGCTTGACTT 1931
.|.|||.||.|.|||...||||||||.||.||.||.||.||||||||.||
BPUM_3148___u 1882 ATCGAAAAGGTCGAGTTGGAAATGAAAGATGCAGCAAAAGCGCTTGATTT 1931
BSNT_05349___ 1932 TGAGAGAGCCGCGGAGCTTCGCGATTTACTTTTAGAGCTAAAAGCGGAAG 1981
|||.|.|||.||.||..|..|.|||.||.|..||||||||||||||||||
BPUM_3148___u 1932 TGAAAAAGCAGCAGAATTAAGAGATCTATTGCTAGAGCTAAAAGCGGAAG 1981
BSNT_05349___ 1982 GATGA 1986
|||||
BPUM_3148___u 1982 GATGA 1986
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