Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02177 and BPUM_3157

See Amino acid alignment / Visit BSNT_02177 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:38
# Commandline: needle
#    -asequence dna-align/BSNT_02177___ykcB.1.24716.seq
#    -bsequence dna-align/BPUM_3157.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02177___ykcB-BPUM_3157.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02177___ykcB-BPUM_3157.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02177___ykcB
# 2: BPUM_3157
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2404
# Identity:    1408/2404 (58.6%)
# Similarity:  1408/2404 (58.6%)
# Gaps:         533/2404 (22.2%)
# Score: 3935.5
# 
#
#=======================================

BSNT_02177___      1 GTGGAAAAGA-------AAAAACGCGAGCTGGA--TATTTTCCTCATCCT     41
                      |.||..|||       |||||...||.||..|  ||||||  ||||..|
BPUM_3157          1 -TTGATTAGACGCTTTCAAAAATTTGATCTTTATTTATTTT--TCATATT     47

BSNT_02177___     42 CATTTTGCTCGCATCTG-CATTCTTAAATATCTATAACATCTGGAATGAT     90
                     .|||||      ||||| |||| |||||.||.||||||||.|||||..|.
BPUM_3157         48 AATTTT------ATCTGCCATT-TTAAACATTTATAACATTTGGAACAAC     90

BSNT_02177___     91 GATACGGTGAATCCTTATTACACCGCTGCAGTCACAAGTATGATGCAAAG    140
                     |||||.|||||..|||||||.|||||.||.||||||||||||||||||||
BPUM_3157         91 GATACAGTGAACGCTTATTATACCGCAGCGGTCACAAGTATGATGCAAAG    140

BSNT_02177___    141 CTTTCATAATTTTTTCTATGCCTCATTCGACGCGGCGGGGTTTATAACGG    190
                     ||..||||||||.||||.|.|.||.|||||..|..|.||.|.|.|.||||
BPUM_3157        141 CTGGCATAATTTCTTCTTTACTTCGTTCGATCCCTCAGGTTATGTCACGG    190

BSNT_02177___    191 TTGATAAACCGCCTATTACGTTTCAGATACAAACCATCAGCGCACTTATA    240
                     |.||||||||.||..|..|.||...|.|.|||||.|||||.||....||.
BPUM_3157        191 TGGATAAACCACCGCTCGCCTTCTGGCTGCAAACGATCAGTGCCAAAATT    240

BSNT_02177___    241 TTCGGTATGCACGGCTGGAGCGTCATCCTGCCTCAGGCACTTGCTGGTGT    290
                     |||||..||||.||||||||.||.|||.|.||.||.||..|.|||||..|
BPUM_3157        241 TTCGGACTGCATGGCTGGAGTGTGATCTTACCCCAAGCTTTAGCTGGCAT    290

BSNT_02177___    291 AGGTTCTGTCCTTTTAATGTATCTGTTAATAAAACCGACATTCGGTAAGA    340
                     .||.||.||...||||||.||||...||.|.|||||.|||||.||..||.
BPUM_3157        291 TGGATCAGTTTATTTAATCTATCGCCTAGTCAAACCTACATTTGGGCAGG    340

BSNT_02177___    341 CAGCAGCAAGAATTGCCTCTTTCATCATGGCATGTACACCGATTGCTGTA    390
                     |.||.||||||.|..|..|..||||.|||||.||.|||||.||.||.||.
BPUM_3157        341 CTGCTGCAAGACTGTCAGCACTCATTATGGCGTGCACACCAATCGCAGTT    390

BSNT_02177___    391 GCTGTAGCACGTACAAACAATGTTGATGCA--TTACTGGTATTT-TTCTT    437
                     ||||||.|.||||||||.||..||||  ||  |||||.||.||| |||||
BPUM_3157        391 GCTGTATCTCGTACAAATAACATTGA--CAGCTTACTCGTTTTTATTCTT    438

BSNT_02177___    438 ATTGCTTGCTACATGGC-------TTC---TCTTTAAAGCGATCAGAAAA    477
                      ||.||.||.|||  ||       |||   .||.||||.| |.|||    
BPUM_3157        439 -TTACTCGCAACA--GCCATGATGTTCAAGGCTGTAAAAC-AGCAG----    480

BSNT_02177___    478 GGAAAGCTGATCTGGCTGTTAGCAGCATTT--TTCGTTGTTGGA------    519
                        |||.|..|.|||         |||.||  |||  |.|||.|      
BPUM_3157        481 ---AAGGTACTTTGG---------GCAATTGCTTC--TTTTGCAATGATC    516

BSNT_02177___    520 -GTA--GGATTTAATACAAAAATGCTGCAGGCTTACATGATTTTACCGGC    566
                      |||  ||.|||||||||||||||||.||.||.||.||||||.|||||||
BPUM_3157        517 GGTATCGGTTTTAATACAAAAATGCTTCAAGCGTATATGATTGTACCGGC    566

BSNT_02177___    567 TTTCTTATTGTTCTATCTGATTGC--GGCAAACGCCACAATCAAGAAAAA    614
                     |.||.|.|||||.||..|.||.||  ..|.||||  |||...||||||||
BPUM_3157        567 TCTCGTCTTGTTTTACATCATCGCCTTCCGAACG--ACATGGAAGAAAAA    614

BSNT_02177___    615 ---------------------AATCGT--TTCATTGGTAAGTGCGTTAGC    641
                                          |||..|  |||.||  ||||||       
BPUM_3157        615 GTTGTTATCACTATTGATCTCAATGATTGTTCTTT--TAAGTG-------    655

BSNT_02177___    642 CGTATTAGCAGCCGTTTCGT-TATCGTGGCCGCTCATTGTCGACAATATC    690
                          ||.|.||...||.|| |||.|.||..|.||    ||    |.|||
BPUM_3157        656 -----TATCTGCTTCTTGGTCTATAGCGGTTGATC----TC----ACATC    692

BSNT_02177___    691 CCTGCAAG-CAAGCGGCCTTATATCGGAAGCAGCCAAACCAACTCTGTTT    739
                     |   .||| .||.||.||||||||.|||...||.|||.|.|||||.|...
BPUM_3157        693 C---AAAGATAATCGTCCTTATATGGGATCAAGTCAATCGAACTCAGCAC    739

BSNT_02177___    740 TGGAATTGGCTTTCGGCTATAACGGAATCCAGCGGCTGACAGGCCAA---    786
                     |.|||||.||.||.||.||.|||||..|.||||||.|.||.||.|||   
BPUM_3157        740 TAGAATTAGCCTTTGGTTACAACGGTCTTCAGCGGTTAACTGGACAACAG    789

BSNT_02177___    787 --------------------AATTCAGGCGGCGG----------------    800
                                         ||.|||||.||.||                
BPUM_3157        790 TCTGGCGGGAGAGGCGGTACAAATCAGGGGGAGGGGCAGCCACCTTCACA    839

BSNT_02177___    801 CCAGGGTG---CGCCAA---ACAAAGACGCTTCAAAAGAAATGTCT----    840
                     .|||||||   .||.||   ||||.||..|.||.|   |.|||.||    
BPUM_3157        840 GCAGGGTGATCAGCAAAATGACAATGAATCATCCA---ACATGACTCAGC    886

BSNT_02177___    841 -----TCTTCTGATAA-------CACTCAAGC-------ACCGCCTAATC    871
                          ||...||.|||       .|||||..|       |||    ||||
BPUM_3157        887 CGCCATCCAGTGGTAATCAAAACAACTCAGACAATTCAAACC----AATC    932

BSNT_02177___    872 AGTCATCAAGCAACAG-CT-------------CATCAAGCGATGGTAAAT    907
                     |.|||.|.|||||||| ||             ||.||.||..||      
BPUM_3157        933 ATTCAACCAGCAACAGACTTCAATGCAAGGACCACCACGCAGTG------    976

BSNT_02177___    908 CCTCAAATGG--CAATATGGCGGCGCCTCCATCCAATGGCCAAATGCCAA    955
                        ||||.||  |||||           |||.|..||      |||||..
BPUM_3157        977 ---CAAACGGTACAATA-----------CCACCTGAT------ATGCCTT   1006

BSNT_02177___    956 GCGGCGGTCA-AG-GA-GGCCCTCCAAGCGGCGGAGATGGCGGCCAAGGC   1002
                     ..||||||.| || || ||.|||||||         |||||||       
BPUM_3157       1007 CAGGCGGTAATAGTGATGGACCTCCAA---------ATGGCGG-------   1040

BSNT_02177___   1003 GGACCCGGCGGAGACGGA-GGGAAAGGCGGTACAGGAACCGGTTCGAAAA   1051
                          .||||||.|  || |||||                 ||       
BPUM_3157       1041 -----GGGCGGAAA--GATGGGAA-----------------GT-------   1059

BSNT_02177___   1052 TGCAATCAGGTTCAGGGATGTTTGGAACGGGAACACCTGGTCCACTGCGG   1101
                             |||||.||.|||||||||||.||||||...||.|||.|.||.
BPUM_3157       1060 --------GGTTCTGGCATGTTTGGAACAGGAACAAAAGGGCCATTACGT   1101

BSNT_02177___   1102 CTTTTCCAACAAGAGTTATCTGATCAAATCAGCTGGCTTCTGCCATTTGC   1151
                     ||.||||||...||.||.||.|||||||||||.|||||.||.||||||||
BPUM_3157       1102 CTGTTCCAATCTGAATTGTCCGATCAAATCAGTTGGCTGCTTCCATTTGC   1151

BSNT_02177___   1152 GATTT---------TTGGAATC---------GCAGGCTTACTGATCGCTG   1183
                     |.|.|         ||||.|||         .|||.|||           
BPUM_3157       1152 GCTCTTCGGTGCGATTGGTATCTTCTTCTCGACAGTCTT-----------   1190

BSNT_02177___   1184 GCGCGAGAGAAAGAAGAAGATTATC--TATAGAGCAGAAGGAAACGGTGT   1231
                            .|||||||||.|  |.||  ||.|.|.||.||.|||||..|.|
BPUM_3157       1191 -------TGAAAGAAGACG--TCTCAATACAAAACAAAAAGAAACACTAT   1231

BSNT_02177___   1232 TCTGGGTTGCGTGGCTTGTACCGATTGCCGGATTCTTCAGTGTCGCAGAA   1281
                     |.|||.|.||.||||||.||||..||||.|.|||.||||||.|.||||.|
BPUM_3157       1232 TTTGGTTAGCTTGGCTTATACCCGTTGCTGCATTTTTCAGTATAGCAGGA   1281

BSNT_02177___   1282 TTTTTCCATCATTATTATCTCATCATGCTGGCACCGCCGATTGCGGCTCT   1331
                     |||||.|||||.||||||.|.|||||||||||||||||.|||||.| |.|
BPUM_3157       1282 TTTTTTCATCACTATTATTTAATCATGCTGGCACCGCCAATTGCTG-TAT   1330

BSNT_02177___   1332 T-GTCGGTGCGGGATGGGTTGCTCTTGTTCATCTGTACCGCAATCAG--A   1378
                     | |..||.||.||.||||||.||.|...|||..|||.|  |||.|||  |
BPUM_3157       1331 TAGCAGGAGCCGGCTGGGTTTCTATGACTCAATTGTTC--CAAACAGGAA   1378

BSNT_02177___   1379 CAGGCTGGAAAGCATGGCTTTTGCCGGGAGCAATTATTGCG---------   1419
                     |.||||..|||..||||||..|.||         |||||||         
BPUM_3157       1379 CTGGCTTTAAAAAATGGCTGCTTCC---------TATTGCGATATTCGTC   1419

BSNT_02177___   1420 ACAACTGGATTTGAATTGTTTATTCTCAGAAACTACA---------ACGA   1460
                     |||||.|.|||||||.|..||||.||    |.|.|||         ||||
BPUM_3157       1420 ACAACCGCATTTGAAATCCTTATCCT----ATCCACATTTACAAGCACGA   1465

BSNT_02177___   1461 T----------CAAATCGGTGCAGGCTGGAGCATCGGTGTAGGTGTTATC   1500
                     |          |.||.||.|||||.|.|.|.|||.|||.|.||       
BPUM_3157       1466 TCGGTCTTGGACTAAGCGTTGCAGTCGGTATCATTGGTATTGG-------   1508

BSNT_02177___   1501 GGCGTGTTGTCAGCGATTGCTTT-GCTGCTGTTTA-------AACAGCGC   1542
                                |.||| |.|||| .||.||.||.|       ||.||   
BPUM_3157       1509 -----------AACGA-TCCTTTCTCTACTTTTGATAAAAGGAAAAG---   1543

BSNT_02177___   1543 CAAAAACCGTT----CAGTTATT-ATGTTTCACTTGCAGCTCTCCTCGCA   1587
                      ||||||   |    ||   ||| .|||           |||||.||||.
BPUM_3157       1544 -AAAAAC---TAAAACA---ATTCGTGT-----------CTCTCATCGCC   1575

BSNT_02177___   1588 TTGCTGGTGATGCCGATT---------TACTGGGCAAGTACACCGCTTCT   1628
                     .|.||.|..|||..||||         |||||||||||.|||||.|||||
BPUM_3157       1576 ATCCTTGGCATGATGATTGCACCACTATACTGGGCAAGCACACCTCTTCT   1625

BSNT_02177___   1629 GTACGGAGGCAACAGCTCACTGCCTGAAACAGGCCCTCAGCTCGCA---T   1675
                     .||.|||||.|||||....||.||.||.||.||.||||||||.|||   |
BPUM_3157       1626 TTATGGAGGAAACAGTATGCTTCCAGAGACTGGTCCTCAGCTTGCAACTT   1675

BSNT_02177___   1676 CAATGAGCGGAAAAGGCATGGG-----AATGTCTGATGCGACTGTAAATG   1720
                     ||   ||.||.|   |||||.|     ||              ||.||||
BPUM_3157       1676 CA---AGTGGCA---GCATGAGTTCACAA--------------GTCAATG   1705

BSNT_02177___   1721 AAAAACTGATCAAATATCTAGAGGAGAATAACTCCGGAGCTGAATACCTA   1770
                     ||||.||||||||.|||||.||..|.||.||..|.||||..||||.||||
BPUM_3157       1706 AAAAGCTGATCAACTATCTTGAAAAAAACAATACGGGAGAAGAATTCCTA   1755

BSNT_02177___   1771 TTCGCCACAACCGATTCGAACACAGCGGCACCATATATCATTAAAACGAA   1820
                     ||||..|||||.|||.|.|.|||.||..|.||.||.||.||||||||...
BPUM_3157       1756 TTCGGAACAACAGATGCAACCACTGCTTCGCCTTACATTATTAAAACAGG   1805

BSNT_02177___   1821 AAAAGCTGTCATGGCTATT-GGCGGATACAGCGGTTCTGA-------CCC   1862
                     |||||||||.||||| ||| ||.||||..||.||.|||||       |  
BPUM_3157       1806 AAAAGCTGTTATGGC-ATTAGGTGGATTTAGTGGATCTGATAACATTC--   1852

BSNT_02177___   1863 GGCGATCACACTGACTCAATTCAAAAAACTTGTAAAAGAAGGAAAAGTGA   1912
                          |||||||.|.|.|||||||..|..|.||.|||||.||.|||.|.|
BPUM_3157       1853 -----TCACACTTAGTGAATTCAAGCAGTTCGTCAAAGACGGTAAAATCA   1897

BSNT_02177___   1913 AATACTTCTTGGCTTCTGGAATGGGAAGAGGCGGAAACAATGACATTGTT   1962
                     |||||||||....||||||.|||   ||||||||.|.|..|||||||.|.
BPUM_3157       1898 AATACTTCTATCTTTCTGGTATG---AGAGGCGGTAGCTCTGACATTCTC   1944

BSNT_02177___   1963 GAATGGGTTGAGAAAAATGGAAAAGAAGTAGCATCAGAAAAATGGCA-AT   2011
                     ...|||.||.|.||||||||||||||||||||..|....||.||||| |.
BPUM_3157       1945 ACTTGGATTCAAAAAAATGGAAAAGAAGTAGCTACTTCTAACTGGCAGAA   1994

BSNT_02177___   2012 CAAGTTCT-GATCAAA----AAACAGAAAATACTGATTCGGCTGATACAT   2056
                     | ||.||| .|||.||    ||.|||.||  ||.||  |.|||.|.|||.
BPUM_3157       1995 C-AGCTCTACATCCAAAACGAATCAGCAA--ACAGA--CAGCTCAGACAG   2039

BSNT_02177___   2057 CAAGCAGCAAGGCTTCAGGTGAAAA----CGGCAAAATGGGCGGACCT-G   2101
                     |   ||.|||    ||||...||||    |.|...|||||.||.|  | |
BPUM_3157       2040 C---CAACAA----TCAGAACAAAATAATCAGTCTAATGGACGAA--TGG   2080

BSNT_02177___   2102 GCGGAATGAATCAGTCAGCAACA----TTATACGAACTACATGCTGATGA   2147
                     ||||||||     |..|||..||    |||||  |||||...|.||||.|
BPUM_3157       2081 GCGGAATG-----GAGAGCGGCACTCTTTATA--AACTATCCGTTGATTA   2123

BSNT_02177___   2148 ATAG   2151
                     |   
BPUM_3157       2124 A---   2124


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