Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02178 and BPUM_3158
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_02178___ykcC.1.24716.seq
# -bsequence dna-align/BPUM_3158.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02178___ykcC-BPUM_3158.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02178___ykcC-BPUM_3158.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02178___ykcC
# 2: BPUM_3158
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1024
# Identity: 725/1024 (70.8%)
# Similarity: 725/1024 (70.8%)
# Gaps: 83/1024 ( 8.1%)
# Score: 2501.0
#
#
#=======================================
BSNT_02178___ 1 AT-GAGCAG-ACATATTCAATATTCAATTGTTGTACCTGTGTATAATGAA 48
|| ||..|| ||||| ||||||||.|||||.||.||.||||||||||||
BPUM_3158 1 ATGGAAAAGAACATA--CAATATTCTATTGTAGTCCCAGTGTATAATGAA 48
BSNT_02178___ 49 GAGCTTGTCATCCATGAAACCTATCAGCG-CTTAAAAGA-GGTCATGGAT 96
||||||||.||.||||||.|.|||||||| ||| |||| .|||||||||
BPUM_3158 49 GAGCTTGTGATTCATGAATCGTATCAGCGCCTT--AAGACCGTCATGGAT 96
BSNT_02178___ 97 CAAACGAAGGAAAA--CTACGAGCTGCTTTTTGTCAACGATGGCAGCAAA 144
..|||| |||.|| .||.|||||.||.||.|||||.||.|||||.|..
BPUM_3158 97 TCAACG--GGAGAAGCATATGAGCTTCTCTTCGTCAATGACGGCAGTATG 144
BSNT_02178___ 145 G-----ACCGCAGTATTGAGATTTTAAGAGAGCACAGCCTGATCGATCCG 189
| ||.||.|.|.||| |||| ||.|.||.|||.||.||||.||
BPUM_3158 145 GATCGTACAGCTGAACTGA----TTAA-AGGGTACTGCCAGACCGATTCG 189
BSNT_02178___ 190 AGAGTGAAAATTATTGATTTTTCAAGGAATTTTGGACACCAGATCGCCAT 239
|..||||.|.|||||||||||||..|.||.||||||||.||.||.|||||
BPUM_3158 190 AATGTGAGACTTATTGATTTTTCTCGTAACTTTGGACATCAAATTGCCAT 239
BSNT_02178___ 240 TACGGCGGGTATGGATTATGCACAGGG-GAATGCAATCGTCGTCATTGAC 288
|||.|||||.||||||||||||.|||| ||| ||..||||.||.|||||.
BPUM_3158 240 TACAGCGGGAATGGATTATGCAAAGGGAGAA-GCTGTCGTAGTGATTGAT 288
BSNT_02178___ 289 GCCGATTTGCAGGACCCTCCTGAACTGATTTTAGATATGATTGAAAAGTG 338
||.|||||.||.||.||.||||||.|.||||||||.|||||||||||.||
BPUM_3158 289 GCGGATTTACAAGATCCACCTGAATTAATTTTAGACATGATTGAAAAATG 338
BSNT_02178___ 339 GAAGGAAGGCTATGAGGTCGTGTACGCCGTGCGGACTAAACGAAAAGGGG 388
||||||.||||||||||||||.|||||.||.||..|.||.||||||||.|
BPUM_3158 339 GAAGGAGGGCTATGAGGTCGTATACGCAGTCCGTTCCAAGCGAAAAGGCG 388
BSNT_02178___ 389 AAACCTTTTTCAAAAAACAAACCGCGGCTATGTTTTACCGGCTTCTCAGC 438
||||..||||||||||..|.|||||..|..|.||.||||| ||.
BPUM_3158 389 AAACAGTTTTCAAAAAGTACACCGCTTCCCTTTTCTACCG-------AGT 431
BSNT_02178___ 439 GGT-------ATGACAGATATTGATATCCCGATTGATACGGGGGATTTTC 481
|.| ||.||.||..|.|||||.||.|||||.||.||.||.|||.
BPUM_3158 432 GTTACGTCAAATCACCGAAGTAGATATTCCTATTGACACCGGCGACTTTA 481
BSNT_02178___ 482 GCCTCATGGACAGAAAAGTCTGTGATGAAATGAAGAGATTAAAAGAAAAA 531
|.||.|||||..|.|||||.|||.|||||||||..|.|.||..|||.|||
BPUM_3158 482 GACTGATGGATCGTAAAGTATGTCATGAAATGAGAAAAATACGAGAGAAA 531
BSNT_02178___ 532 AATCCATTTGTCAGAGGGCTAGTCAGCTGGGTGGGCTTTAAACAGACAGC 581
||.|||||||||.|.||..||||.||||||||.||.||.||||||...||
BPUM_3158 532 AACCCATTTGTCCGCGGATTAGTGAGCTGGGTCGGTTTCAAACAGGTTGC 581
BSNT_02178___ 582 GGTCGAGTATGTACGTGATGAAAGGCTTGCCGGAGAAACAAAGTACCCGC 631
|||.||.|||||.||.|||||..||||.||.|||||||||||||||||.|
BPUM_3158 582 GGTAGAATATGTTCGGGATGAGCGGCTGGCAGGAGAAACAAAGTACCCTC 631
BSNT_02178___ 632 TCAAGAAAATGCTGAAGCTGTCAATGGACGGCATCACGACATTTTCACAT 681
||||.||.|||||.|||||.||||||||.||.|||||..|.|||||..|.
BPUM_3158 632 TCAAAAAGATGCTCAAGCTCTCAATGGATGGGATCACATCTTTTTCTTAC 681
BSNT_02178___ 682 AAACCGCTGAAGCTGGCAAGCTATG-CGGGGATTTTAATGTCAGGTGCTG 730
|||||..|.|||||.||.||| .|| |.||.|||..|.|.||||.|..||
BPUM_3158 682 AAACCTTTAAAGCTAGCCAGC-GTGACAGGTATTGCACTTTCAGCTATTG 730
BSNT_02178___ 731 GATTTCTGTATATGTTTATCGTGCTGTATCTGAAGCTATTCACAGACAGC 780
|.||..|.|..||||||.|.||..|.|||.|.||.||.||.|||.|||||
BPUM_3158 731 GCTTCATATCGATGTTTCTAGTTTTATATTTAAAACTTTTTACAAACAGC 780
BSNT_02178___ 781 ACGATTACCGGCTGGTCATCACTTATTGTGATCCAGCTCCTGTTCAGCGG 830
||.||.|||||||||...|||.|.|||||.||.|||||..|.||.|||||
BPUM_3158 781 ACCATCACCGGCTGGAGTTCATTAATTGTCATTCAGCTATTCTTTAGCGG 830
BSNT_02178___ 831 CATTGTCCTTCTGATTTTGGGCGTGATCGGCGAATATATCGGCAGAATCT 880
.|||.||||..|.||.||.|||.|||||||.||.|||||.|||.||||.|
BPUM_3158 831 GATTATCCTCTTTATGTTAGGCATGATCGGAGAGTATATTGGCCGAATTT 880
BSNT_02178___ 881 ACGATGAAGCCAAAGACAGGCCGCTTTACATCGTCCAAAAATCG-TATGG 929
|||||||||||||.|||.||||||||||.||||| ||.|.||.| |||||
BPUM_3158 881 ACGATGAAGCCAAGGACCGGCCGCTTTATATCGT-CAGAGATAGCTATGG 929
BSNT_02178___ 930 AATTGAAAGTAA-------------------------------AAGACTC 948
..||.|...||| ||| |
BPUM_3158 930 CCTTCAGGCTAAGCCACATCCAGTTCAATCCCCTGTACATTTCAAG---C 976
BSNT_02178___ 949 TATAGAGACCAGCATATGTCATAA 972
.|||.| |.|||||| |||
BPUM_3158 977 AATATA-AACAGCAT------TAA 993
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