Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01306 and BPUM_3161
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:53
# Commandline: needle
# -asequence dna-align/BSNT_01306___yfkO.1.24716.seq
# -bsequence dna-align/BPUM_3161.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01306___yfkO-BPUM_3161.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01306___yfkO-BPUM_3161.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01306___yfkO
# 2: BPUM_3161
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 727
# Identity: 468/727 (64.4%)
# Similarity: 468/727 (64.4%)
# Gaps: 113/727 (15.5%)
# Score: 1405.0
#
#
#=======================================
BSNT_01306___ 1 ATG-----------GCAGATCTAAAGAAACAAATTCTGGATGCATACAAT 39
||| ||| || ||||.|||.||||..|.||.||.||..|.
BPUM_3161 1 ATGCGAGACAAAGAGCA-AT-TAAAAAAAGAAATCATTGAGGCGTATGAA 48
BSNT_01306___ 40 TTCAGGCATGCGACTAAGGAATTTGACCCGAATAAAAAAG-TGTCAGACA 88
|||.|.||||||||.||.||.|||||||| ||..|||||| |..|||| |
BPUM_3161 49 TTCCGTCATGCGACAAAAGAGTTTGACCC-AACGAAAAAGATTCCAGA-A 96
BSNT_01306___ 89 G-CGATTTTGAATTTATTTTAGAAACAGGAAGACTGTCTCCGAGCTCACT 137
| .|||||||..||.||||||||.|||||||||||.||.||.|||||..|
BPUM_3161 97 GATGATTTTGCGTTCATTTTAGAGACAGGAAGACTTTCCCCAAGCTCTGT 146
BSNT_01306___ 138 CGGCCTTGAGCCTTGGAAATTTGTCGTCGTCCAAAATCCGGA---GTTCC 184
|||..|||||||||||||.||..|||||||.|||||| || .||..
BPUM_3161 147 CGGATTTGAGCCTTGGAAGTTCCTCGTCGTTCAAAAT---GAATCATTTA 193
BSNT_01306___ 185 GCGAGAAGCTTCGTGAATACACATGGGGCGCGCAAAAGCAGCTGCCGACC 234
|.|||||..|....|||||.||||||||.|||||||||||||||||.||.
BPUM_3161 194 GAGAGAAATTAAAAGAATATACATGGGGTGCGCAAAAGCAGCTGCCAACT 243
BSNT_01306___ 235 GCAAGCCATTTCGTCCTGATTCTTGCGCGTACAG-CGAAGGATATCA--- 280
||.||||||||.||..|.|||.|.||..|.|||| ||...|.|||.|
BPUM_3161 244 GCCAGCCATTTTGTGATCATTTTGGCAAGAACAGACGCCCGTTATGATTC 293
BSNT_01306___ 281 AATATAATGCGGACTACATCAAACGTCATTTAAAAGAAGTAAAACA---- 326
|..|| ||||.||.||.||| ||.|||.|||.||
BPUM_3161 294 ACCAT-ATGCAGAGTATATC-------------AACAAGGAAATCAAGGG 329
BSNT_01306___ 327 AATGCC--TCAAGACGTGTACGAAGGCTATTTAAGCAAA-------ACAG 367
||||.| .|.|.||||.|..||.|| || ||| |||
BPUM_3161 330 AATGACAGACGAAACGTTTGAGATGG-----TA---AAAGGACGCTACA- 370
BSNT_01306___ 368 AAGAATTCCAGAAAAACGATTTGCATTTGCTTGAAAGTGACAGAACATTG 417
||.|||||||..|.||.|||.|.||||||.|.||||.||||.|.||..|.
BPUM_3161 371 AACAATTCCAAGAGAATGATCTTCATTTGATGGAAACTGACCGTACGCTC 420
BSNT_01306___ 418 TTTGACTGGGCATCAAAACAAACCTATATCGCGCTTGGCAACATGATGAC 467
||.||.|||||.||.||||||||.|||||.||.||.||.||.||||||||
BPUM_3161 421 TTCGATTGGGCTTCTAAACAAACGTATATTGCTCTCGGTAATATGATGAC 470
BSNT_01306___ 468 TGCCGCTGCGCAAATCGGTGTTGATTCCTGCCCGATCGAAGGCTTCCAG- 516
.|||||.||.|||||.||..|||||||.|||||.||.||.||.|| |||
BPUM_3161 471 GGCCGCGGCACAAATTGGCATTGATTCTTGCCCTATTGAGGGATT-CAGC 519
BSNT_01306___ 517 TACGATCACATTCACCGTATTCTTGAAGAAGAAGGCCTTCTGGAAAACGG 566
|||||..|.|||||.|||||.|||||.||.|||||..|.||.|||.|.||
BPUM_3161 520 TACGACGAAATTCATCGTATGCTTGAGGAGGAAGGATTACTCGAAGATGG 569
BSNT_01306___ 567 -AAGCTTTGATATTTCTGTGATGGTGGCATTCGGCTACCGTGTGAGAGAC 615
.|| |..||.||.||||||||||..||.||.||.||.||.||.|..||.
BPUM_3161 570 TCAG-TACGACATCTCTGTGATGGCTGCCTTTGGGTATCGCGTCATCGAG 618
BSNT_01306___ 616 CC------------------TCGTCCGAAAACAAGATCTGCTGTTGAAGA 647
|| |||||||| || |.|||||
BPUM_3161 619 CCAAAGCGCGGCAAAACACGTCGTCCGA----------TG--GATGAAG- 655
BSNT_01306___ 648 T----GTTGTGAAATGG----GTGTAA 666
| ||| ||| || |||
BPUM_3161 656 TAGCCGTT------TGGATTCGT-TAA 675
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