Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05361 and BPUM_3164

See Amino acid alignment / Visit BSNT_05361 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:58
# Commandline: needle
#    -asequence dna-align/BSNT_05361___yvzD.1.24716.seq
#    -bsequence dna-align/BPUM_3164.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05361___yvzD-BPUM_3164.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05361___yvzD-BPUM_3164.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05361___yvzD
# 2: BPUM_3164
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 358
# Identity:     252/358 (70.4%)
# Similarity:   252/358 (70.4%)
# Gaps:          26/358 ( 7.3%)
# Score: 888.5
# 
#
#=======================================

BSNT_05361___      1 ------------------GTGCGTGAAAAAAAATATTATGAAT---TAGT     29
                                       |||.|.||.|||||||||||.||.|   |||.
BPUM_3164          1 TTGAAAAGGGCAAGTATTGTGAGAGAGAAAAAATATTACGAGTTGGTAGA     50

BSNT_05361___     30 GGAACAATTAAAAGACAGAACACAAGACGTAACATTTTCAGCTACAAAAG     79
                     |||.|  ||||.||.| |.||..||||.||.||.|||||.||||||||.|
BPUM_3164         51 GGAGC--TTAAGAGTC-GTACGAAAGATGTGACGTTTTCCGCTACAAAGG     97

BSNT_05361___     80 CACTAAGTCTTCTTATGCTGTTCAGCAGATATTTGGTCAATTACACCAAT    129
                     ||.|||||||.||.||||||||.|||||.||.||||||||||||||.|..
BPUM_3164         98 CATTAAGTCTGCTCATGCTGTTAAGCAGGTACTTGGTCAATTACACAACG    147

BSNT_05361___    130 GTCGAATCAGTAAATGACATTAATGAGGAATGCGCCAAACAT-TATTTTA    178
                     ||.||||||||..|.||.||..||||.||.||.| |..|.|| ||.||.|
BPUM_3164        148 GTAGAATCAGTCGACGAAATAGATGAAGACTGTG-CTGAGATATACTTCA    196

BSNT_05361___    179 ACTACTTAATGAAAAACCATAAGCGATTAGGAATTAATCTGACAGATATA    228
                     |.||.||||||.|.||.||||||.||.|.||.||.||..|.||.||.||.
BPUM_3164        197 ATTATTTAATGGATAATCATAAGAGACTTGGTATAAACTTAACCGACATC    246

BSNT_05361___    229 AAAAGGTCGATGCATCTAATCAGCGGGTTATTGGATGTGGATGTAAACCA    278
                     ||.||.||||||||.||..|..||||..||.|.|||||.|||||.||.||
BPUM_3164        247 AAGAGATCGATGCAGCTGCTTGGCGGCATACTAGATGTAGATGTCAATCA    296

BSNT_05361___    279 CTATTTAAAGGATTTTTCACTATCGAATGTCACGCTGTGGATGACGCAAG    328
                     |||.|||||.|||||||||||.|||||||||||.||.|||||||..||.|
BPUM_3164        297 CTACTTAAAAGATTTTTCACTGTCGAATGTCACACTTTGGATGAATCAGG    346

BSNT_05361___    329 AGAGATAA    336
                     |||.||||
BPUM_3164        347 AGAAATAA    354


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