Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05366 and BPUM_3172
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:59
# Commandline: needle
# -asequence dna-align/BSNT_05366___cccB.1.24716.seq
# -bsequence dna-align/BPUM_3172___cccB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05366___cccB-BPUM_3172___cccB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05366___cccB-BPUM_3172___cccB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05366___cccB
# 2: BPUM_3172___cccB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 387
# Identity: 216/387 (55.8%)
# Similarity: 216/387 (55.8%)
# Gaps: 105/387 (27.1%)
# Score: 545.0
#
#
#=======================================
BSNT_05366___ 1 ATGAAATCAAAG----TTATCGATACTAATGATTGGATTTGCGCTTTCTG 46
|||||| .|||| |||.||||.| ||.|||.| ||| .|.|||
BPUM_3172___c 1 ATGAAA-AAAAGCGGATTAACGATGC---TGTTTGCA---GCG-ATGCTG 42
BSNT_05366___ 47 -TTCTGTTGGCTGCCTGCGGA------TCAAACGATGCA-----AAAGAA 84
||.||.||||.||.||.||| |||| |..||| ||||||
BPUM_3172___c 43 CTTGTGCTGGCGGCTTGTGGAGGAAATTCAA--GCAGCAGTGACAAAGAA 90
BSNT_05366___ 85 GAGAAGACAGACACTGGCAGCAAGACGGAAGCCACTGCATC-----TGA- 128
|||||||| |||| ||.|| |||
BPUM_3172___c 91 ---------------GGCAGCAA-----AAGC----GCCTCAAACGTGAG 116
BSNT_05366___ 129 ---AGGGGAAGAATTATATCAGCAAAGCTGCGTAGGCTGCCACGGCAAGG 175
.||.||.|||.|.||||||||||.|||..|.|||||.||.||.||.|
BPUM_3172___c 117 CAGTGGTGAGGAAATTTATCAGCAAAACTGTATTGGCTGTCATGGGAAAG 166
BSNT_05366___ 176 ATTTAGAAGGTGTGTC--AGG--------GCCTAATCTCCAAGAGGTCGG 215
|..|| |.||.| ||| ||||.| ||||.||.||
BPUM_3172___c 167 ACCTA-----TCTGGCGGAGGCGGACCAAGCCTGA-----AAGAAGTAGG 206
BSNT_05366___ 216 AGGCAAATACGATGAACACAAAATTGAAAGCATT-------AT--TAAAA 256
....||||||.|||||..|.||||||.|...||| || ||||
BPUM_3172___c 207 GAAAAAATACAATGAAAGCCAAATTGCAGATATTGCACACAATGGTAAA- 255
BSNT_05366___ 257 ACGGCCGCGGCAATATGCCAAAGGGGCTTGTAGAGGATAACGAAGCCGCT 306
|||..||||||||..||..|.|||||.||.||..||||
BPUM_3172___c 256 --------GGCTCTATGCCAAGCGGAATGGTAGATGAGAAGCAAGC---- 293
BSNT_05366___ 307 GTTA----TTGCCAAATGGCTGTCAGAAAAAAAGTAA 339
|..| |.||.||||||||..||||.|||||.|||
BPUM_3172___c 294 GAAAGAAGTAGCTAAATGGCTTGCAGAGAAAAAATAA 330
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