Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05369 and BPUM_3177

See Amino acid alignment / Visit BSNT_05369 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:59
# Commandline: needle
#    -asequence dna-align/BSNT_05369.1.24716.seq
#    -bsequence dna-align/BPUM_3177___prfB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05369-BPUM_3177___prfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05369-BPUM_3177___prfB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05369
# 2: BPUM_3177___prfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 989
# Identity:     771/989 (78.0%)
# Similarity:   771/989 (78.0%)
# Gaps:          10/989 ( 1.0%)
# Score: 2980.0
# 
#
#=======================================

BSNT_05369         1 ATGGCTGATCCGGAATTCTGGAATGATCAGCAAAAAGCTCAAACGGTTAT     50
                     |||.|.||..|.||.||.|||||||||||||||||.||.|||...||.||
BPUM_3177___p      1 ATGTCAGAGGCTGATTTTTGGAATGATCAGCAAAAGGCACAAGGCGTCAT     50

BSNT_05369        51 AAATGAAGCAAACGGTTTAAAGGATTATGTCAATTCGTATAAAAAATTGA    100
                     .||||||||.||.|...||||||||.||||.|||.|.||..|..|..|.|
BPUM_3177___p     51 CAATGAAGCCAATGCGCTAAAGGATAATGTGAATGCATACCATGAGCTCA    100

BSNT_05369       101 ATGAATCCCACGAAGAATTACAAATGACTCATGATCTTTTGAAAGAAGA-    149
                     .||||||.||.|||||..|.||||||||.|||||.||.||.||.||||| 
BPUM_3177___p    101 GTGAATCTCATGAAGAGCTGCAAATGACACATGACCTATTAAAGGAAGAT    150

BSNT_05369       150 ---GCCGGACACTGATCTCCAGCTTGAGCTTGAAAAAGAACT-AAAATCA    195
                        |.||.|    ||.||.||..|.||||||||.|||||.|| ||.|.| 
BPUM_3177___p    151 TATGACGAA----GAGCTTCATGTAGAGCTTGAGAAAGAGCTGAAGAAC-    195

BSNT_05369       196 TTAACAAAAGACTTCAATGAGTTTGAGCTTCAGCTTCTTCTCAGCGAGCC    245
                     |||||.||..|.||.||.|||||||||.|.||||||||..|.||.||.||
BPUM_3177___p    196 TTAACCAAGCAATTTAACGAGTTTGAGTTGCAGCTTCTCTTAAGTGAACC    245

BSNT_05369       246 GTATGATAAAAATAACGCGATTTTAGAACTGCACCCTGGTGCTGGCGGTA    295
                     .|||||||||||.||.||.||..|.||.||.|||||.|||||.|||||||
BPUM_3177___p    246 ATATGATAAAAACAATGCCATCCTCGAGCTTCACCCAGGTGCAGGCGGTA    295

BSNT_05369       296 CAGAGTCACAGGACTGGGGCTCTATGCTTCTTAGAATGTATACAAGATGG    345
                     |.||.||||||||||||||.|||||||||.|.|||||||||||..|.|||
BPUM_3177___p    296 CTGAATCACAGGACTGGGGTTCTATGCTTTTGAGAATGTATACTCGCTGG    345

BSNT_05369       346 GGAGAGCGCCGCGGCTTTAAAGTAGAAACACTCGATTACCTTCCAGGTGA    395
                     |.|||||||.|.||||||||.||.|||||.||.|||||.|||||.|||||
BPUM_3177___p    346 GCAGAGCGCAGGGGCTTTAAGGTTGAAACGCTTGATTATCTTCCTGGTGA    395

BSNT_05369       396 CGAGGCTGGAATCAAGTCAGTGACATTGCTCATCAAAGGACATAACGCTT    445
                     .||.||.|||||.|||||.||.|||||||||||||||||.||||||||.|
BPUM_3177___p    396 TGAAGCAGGAATTAAGTCTGTCACATTGCTCATCAAAGGGCATAACGCAT    445

BSNT_05369       446 ACGGGTATCTCAAAGCAGAAAAAGGTGTCCATCGTCTTGTGCGGATCTCA    495
                     ||||.||..|.||||||||||||||.|||||||||||.||.||.||.||.
BPUM_3177___p    446 ACGGCTACTTAAAAGCAGAAAAAGGCGTCCATCGTCTGGTTCGTATTTCT    495

BSNT_05369       496 CCATTTGATTCATCAGGCCGCCGCCACACATCTTTCGTTTCATGTGAAGT    545
                     ||.|||||||||||.||.||..|.||.||.|||||||||||.|||||.||
BPUM_3177___p    496 CCTTTTGATTCATCTGGTCGTAGACATACTTCTTTCGTTTCCTGTGATGT    545

BSNT_05369       546 CATGCCTGAATTTAACGATGAAATTGATATTGATATTCGTGCGGAGGATA    595
                     |||||||||.||.||.||.|||||.||||||||||||||..|.||.||||
BPUM_3177___p    546 CATGCCTGAGTTCAATGAAGAAATCGATATTGATATTCGAACAGAAGATA    595

BSNT_05369       596 TTAAAGTTGACACGTACCGTGCAAGCGGCGCGGGCGGACAGCACGTCAAT    645
                     |.|||||.||.|||||.||||||||||||||.||.|||||||||||||||
BPUM_3177___p    596 TCAAAGTAGATACGTATCGTGCAAGCGGCGCTGGTGGACAGCACGTCAAT    645

BSNT_05369       646 ACGACGGATTCAGCCGTTCGGATTACTCACTTGCCGACGAACGTAGTTGT    695
                     ||||||||.||.||||||||.||.||.||..|.||.||.||.||.||.||
BPUM_3177___p    646 ACGACGGACTCTGCCGTTCGTATCACACATATTCCAACCAATGTCGTGGT    695

BSNT_05369       696 GACATGCCAAACGGAGCGCTCACAAATTAAAAACCGTGAAAGAGCCATGA    745
                     |||||||||||||||..|.||||||||.||||||.|.|||.|.||.||||
BPUM_3177___p    696 GACATGCCAAACGGAAAGATCACAAATCAAAAACAGAGAACGTGCGATGA    745

BSNT_05369       746 AAATGCTGAAGGCCAAGCTGTATCAGCGCAGAATTGAAGAGCAGCAGGCT    795
                     |||||||.||..|.||.||.|||||..|..|.||.|||||.|||||||||
BPUM_3177___p    746 AAATGCTAAAATCGAAACTTTATCAAAGACGGATCGAAGAACAGCAGGCT    795

BSNT_05369       796 GAACTGGATGAAATTCGTGGTGAACAAAAAGAAATCGGCTGGGGCAGCCA    845
                     ||..|||||||||||.|.||.||.||.||||||||.||||||||.|||||
BPUM_3177___p    796 GAGTTGGATGAAATTAGAGGAGAGCAGAAAGAAATTGGCTGGGGAAGCCA    845

BSNT_05369       846 AATCCGTTCTTATGTATTCCATCCGTATTCCATGGTAAAAGACCATCGGA    895
                     |||.||.|||||||||||||||||||||||..|.||||||||||||||.|
BPUM_3177___p    846 AATTCGCTCTTATGTATTCCATCCGTATTCTCTTGTAAAAGACCATCGTA    895

BSNT_05369       896 CCAATACAGAAATGGGGAACGTTCAAGCTGTAATGGATGGTGACATTGAT    945
                     |||||||.||.|||||.||.||||||||.||.||||||||.||..|.|||
BPUM_3177___p    896 CCAATACGGAGATGGGAAATGTTCAAGCAGTCATGGATGGAGATTTAGAT    945

BSNT_05369       946 ACGTTTATTGATGCCTACCTGCGTTCTAAGCTTTCATAA    984
                     .|.|||||.||.||.||..|.|||||.||..|.||||||
BPUM_3177___p    946 TCATTTATCGACGCATATTTACGTTCGAAATTATCATAA    984


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