Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05370 and BPUM_3178

See Amino acid alignment / Visit BSNT_05370 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:59
# Commandline: needle
#    -asequence dna-align/BSNT_05370___secA.1.24716.seq
#    -bsequence dna-align/BPUM_3178___secA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05370___secA-BPUM_3178___secA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05370___secA-BPUM_3178___secA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05370___secA
# 2: BPUM_3178___secA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2557
# Identity:    2019/2557 (79.0%)
# Similarity:  2019/2557 (79.0%)
# Gaps:          62/2557 ( 2.4%)
# Score: 7913.0
# 
#
#=======================================

BSNT_05370___      1 ATGCTTGGAATTTTAAATAAAATGTTTGATCCAACAAAACGTACGCTGAA     50
                     |||||||||||.|||||.|||.||||||||||.||.|||||||||.|.|.
BPUM_3178___s      1 ATGCTTGGAATCTTAAACAAAGTGTTTGATCCTACGAAACGTACGATCAG     50

BSNT_05370___     51 TAGATACGAAAAAATTGCTAACGATATTGATGCGATTCGCG---GAGACT     97
                     .|.|||.|||||||..||.||.||.|||||.||   ||.||   .|||.|
BPUM_3178___s     51 CAAATATGAAAAAAAAGCAAATGAAATTGAAGC---TCTCGCTCAAGATT     97

BSNT_05370___     98 ATGA-AAATCTCTCTGACGACGCGTT--GAAACATAAAACAATTGAATTT    144
                     ..|| |||| |.||||||||.||.||  |||  |||||||.||.||||||
BPUM_3178___s     98 TCGAGAAAT-TATCTGACGAGGCTTTACGAA--ATAAAACGATCGAATTT    144

BSNT_05370___    145 AAAGAGCGTCTTGAAAAAGGGGCGACAA----CGGATGATCTTCTTGTTG    190
                     |||||....||||||||||    |||||    .||||||.||..|.||||
BPUM_3178___s    145 AAAGAAAAACTTGAAAAAG----GACAATCCGTGGATGACCTGTTGGTTG    190

BSNT_05370___    191 AAGCTTTCGCTGTTGTTCGAGAAGCTTCACGCCGCGTAACAGGTATGTTT    240
                     ||||.||.||....|||||.||.||||||||||||||.|||||.|||||.
BPUM_3178___s    191 AAGCATTTGCAACGGTTCGCGAGGCTTCACGCCGCGTGACAGGAATGTTC    240

BSNT_05370___    241 CCGTTTAAAGTCCAGCTCATGGGGGGCGTAGCGCTTCATGACGGAAATAT    290
                     ||.|||||.||.||||||||||||||..|.|||||||||||.||.||.||
BPUM_3178___s    241 CCATTTAAGGTGCAGCTCATGGGGGGGATCGCGCTTCATGAAGGCAACAT    290

BSNT_05370___    291 CGCGGAAATGAAAACAGGGGAAGGGAAAACATTAACGTCTACTCTGCCTG    340
                     |.|.||.|||||||||||.|||||.|||||.||.||.||.||..||||||
BPUM_3178___s    291 CTCTGAGATGAAAACAGGTGAAGGTAAAACGTTGACTTCAACAATGCCTG    340

BSNT_05370___    341 TTTATTTAAATGCGTTAACAGGTAAAGGCGTACACGTCGTGACTGTCAAC    390
                     |||||||||||||..||.|.||.||||||||.|||.|.|||||.||||||
BPUM_3178___s    341 TTTATTTAAATGCTCTATCTGGAAAAGGCGTCCACATTGTGACAGTCAAC    390

BSNT_05370___    391 GAATACTTGGCAAGCCGTGACGCTGAACAAATGGGGAAAATTTTCGAGTT    440
                     |||||.||||||||||||||.||.||..|||||||.||.|||||.||.||
BPUM_3178___s    391 GAATATTTGGCAAGCCGTGATGCAGAGGAAATGGGCAAGATTTTTGAATT    440

BSNT_05370___    441 TCTCGGTCTGACTGTCGGCTTGAATTTAAACTCAATGTCA---AAAGACG    487
                     |||.||..|.||.||.|||||.||.||||||   |..|.|   |||||.|
BPUM_3178___s    441 TCTTGGCTTAACGGTAGGCTTAAACTTAAAC---AGCTTAGACAAAGATG    487

BSNT_05370___    488 AAAAACGGGAAGCTTATGCAGCTGACATTACTTACTCTACAAACAATGAG    537
                     |||||.|.|||||.|||||.|||||.|||||.||.||.|||||||||||.
BPUM_3178___s    488 AAAAAAGAGAAGCGTATGCCGCTGATATTACGTATTCAACAAACAATGAA    537

BSNT_05370___    538 CTTGGCTTCGACTATTTGCGTGACAATATGGTTCTTTATAAAGAGCAGAT    587
                     ||||||||.||||||||.||.||.||.|||||.|||||.||||||||.||
BPUM_3178___s    538 CTTGGCTTTGACTATTTACGAGATAACATGGTGCTTTACAAAGAGCAAAT    587

BSNT_05370___    588 GGTTCAGCGCCCGCTTCATTTTGCGGTAATAGATGAAGTTGACTCTATTT    637
                     |||.||..|.||||||||||.|||.|||||.|||||.||||||||.||.|
BPUM_3178___s    588 GGTCCAAAGACCGCTTCATTATGCCGTAATCGATGAGGTTGACTCCATCT    637

BSNT_05370___    638 TAATTGATGAAGCGAGAACACCTCTTATCATTTCTGGACAAGCTGCCAAA    687
                     ||||||||||||||||||||||.|||||||||||||||||||||||.|||
BPUM_3178___s    638 TAATTGATGAAGCGAGAACACCGCTTATCATTTCTGGACAAGCTGCGAAA    687

BSNT_05370___    688 TCCACTAAGCTGTACGTACAGGCAAATGCTTTTGTCCGTACGTTAAAAGC    737
                     ||.||.|||||.||.|||||.||.|||||.|||||.|||||.||||||  
BPUM_3178___s    688 TCTACAAAGCTTTATGTACAAGCGAATGCGTTTGTTCGTACATTAAAA--    735

BSNT_05370___    738 GGAGAAG--GATTACACGTACGATATCAAAACAAAAGCTGTACAGCTTAC    785
                     ..|||||  ||||.|||.||.|||||.|||||||||..|||||||||.||
BPUM_3178___s    736 ATAGAAGATGATTTCACATATGATATTAAAACAAAAAGTGTACAGCTGAC    785

BSNT_05370___    786 TGAAGAAGGAATGACGAAGGCGGAAAAAGCGTTCGGCATCGATAACCTCT    835
                     .|||...|||||||||||||||||||||||.|||||||||||.|||.|.|
BPUM_3178___s    786 AGAAAGCGGAATGACGAAGGCGGAAAAAGCTTTCGGCATCGAGAACTTAT    835

BSNT_05370___    836 TTGATGTGAAGCATGTCGCGCTCAACCACCATATCAACCAGGCCTTAAAA    885
                     |||||||.||.||||||||.||.|||||.||.|||...|||||..||||.
BPUM_3178___s    836 TTGATGTCAAACATGTCGCACTGAACCATCACATCGCTCAGGCGCTAAAG    885

BSNT_05370___    886 GCTCACGTTGCGATGCAAAAGGACGTTGACTATGTAGTGGAAGACGGACA    935
                     ||.||.||||||||||||||.||.||.||.|||||.||.|||||.||.||
BPUM_3178___s    886 GCACATGTTGCGATGCAAAAAGATGTGGATTATGTCGTTGAAGAAGGTCA    935

BSNT_05370___    936 GGTTGTTATTGTTGATTCCTTCACGGGACGTCTGATGAAAGGCCGCCGCT    985
                     .||.|||||||||||.||.|||||.||||||||.||||||||.|||||.|
BPUM_3178___s    936 AGTGGTTATTGTTGACTCGTTCACAGGACGTCTCATGAAAGGACGCCGTT    985

BSNT_05370___    986 ACAGTGAGGGGCTTCACCAAGCGATTGAAGCGAAGGAAGGGCTTGAGATT   1035
                     |.|||||.||.||.||.|||||.|||||.||.||.|||||.||.||..|.
BPUM_3178___s    986 ATAGTGAAGGTCTGCATCAAGCCATTGAGGCAAAAGAAGGTCTCGAAGTG   1035

BSNT_05370___   1036 CAAAACGAAAGCATGACCTTGGCGACGATTACGTTCCAAAACTACTTCCG   1085
                     ||.||||||||.||||||.|.||.|||||.||.|||||.|||||||||||
BPUM_3178___s   1036 CAGAACGAAAGTATGACCCTTGCAACGATCACATTCCAGAACTACTTCCG   1085

BSNT_05370___   1086 AATGTACCAAAAACTTGCCGGTATGACGGGTACAGCTAAGACAGAGGAAG   1135
                     .|||||..||||.|||.|.||||||||.||||||||.||.||.||.||||
BPUM_3178___s   1086 TATGTATGAAAAGCTTTCTGGTATGACCGGTACAGCGAAAACGGAAGAAG   1135

BSNT_05370___   1136 AAGAATTCCGCAACATCTACAACATGCAGGTTGTCACGATCCCTACCAAC   1185
                     ||||||||||.|||||.|||||||||||||||||.||.|||||.||||||
BPUM_3178___s   1136 AAGAATTCCGTAACATTTACAACATGCAGGTTGTGACAATCCCGACCAAC   1185

BSNT_05370___   1186 AGGCCTGTTGTCCGTGATGACCGTCCTGATTTAATTTACCGCACGATGGA   1235
                     ...||.||.||.|||||||||.|.||||||||||||||||||||.|||||
BPUM_3178___s   1186 CAACCAGTCGTTCGTGATGACAGACCTGATTTAATTTACCGCACAATGGA   1235

BSNT_05370___   1236 AGGAAAGTTTAAGGCAGTTGCGGAGGATGTCGCACAGCGTTACATGACGG   1285
                     |||.||.|||||.|||||.||.||.|||||.||.|||||.||.|||||.|
BPUM_3178___s   1236 AGGTAAATTTAAAGCAGTGGCTGAAGATGTTGCGCAGCGCTATATGACAG   1285

BSNT_05370___   1286 GACAGCCTGTTCTAGTCGGTACGGTTGCCGTTGAAACATCTGAATTGATT   1335
                     |.||.||.|||||.|||||.||.||.||.|||||.||.|||||..|.|||
BPUM_3178___s   1286 GGCAACCAGTTCTTGTCGGAACAGTAGCGGTTGAGACGTCTGAGCTTATT   1335

BSNT_05370___   1336 TCTAAGCTGCTTAAAAACAAAGGAATTCCGCATCAAGTGTTAAATGCCAA   1385
                     |||||||||||||||||.|||||.|||||.|||||||||||||||||.||
BPUM_3178___s   1336 TCTAAGCTGCTTAAAAATAAAGGGATTCCTCATCAAGTGTTAAATGCGAA   1385

BSNT_05370___   1386 AAACCATGAACGTGAAGCGCAGATCATTGAAGAGGCCGGCCAAAAAGGCG   1435
                     |||||||||.|||||.||.||.||.|||||||||||.||.|||||.||.|
BPUM_3178___s   1386 AAACCATGAGCGTGAGGCACAAATTATTGAAGAGGCTGGTCAAAAGGGTG   1435

BSNT_05370___   1436 CAGTTACGATTGCGACTAACATGGCGGGGCGCGGAACGGACATTAAGCTT   1485
                     |.||.||.||||||||.||||||||.||.||.||.||||||||.||||||
BPUM_3178___s   1436 CCGTCACCATTGCGACCAACATGGCAGGACGTGGTACGGACATCAAGCTT   1485

BSNT_05370___   1486 GGCGAAGGTGTAAAAGAGCTTGGCGGACTCGCTGTTGTCGGAACAGAACG   1535
                     ||||||||.||.|||||.||||||||.||.|||||..|.||.|||||.||
BPUM_3178___s   1486 GGCGAAGGCGTCAAAGAACTTGGCGGTCTAGCTGTCATTGGGACAGAGCG   1535

BSNT_05370___   1536 ACATGAATCACGCCGGATTGACAATCAGCTTCGAGGTCGTTCCGGACGTC   1585
                     .|||||||||||.||.|||||.||.||||||||.||.|||||.||.||||
BPUM_3178___s   1536 TCATGAATCACGTCGTATTGATAACCAGCTTCGTGGACGTTCTGGTCGTC   1585

BSNT_05370___   1586 AGGGAGACCCGGGGATTACTCAATTTTATCTTTCTATGGAAGATGAATTG   1635
                     |.||||||||.||||||||.|||||.|||||.||.||||||||||||||.
BPUM_3178___s   1586 AAGGAGACCCAGGGATTACCCAATTCTATCTCTCCATGGAAGATGAATTA   1635

BSNT_05370___   1636 ATGCGCAGATTCGGAGCTGAGCGGACAATGGCGATGCTGGACCGCTTCGG   1685
                     ||||||.||||.||.||.|||||.||.|||||.|||||.||||||||.||
BPUM_3178___s   1636 ATGCGCCGATTTGGTGCAGAGCGCACGATGGCAATGCTTGACCGCTTTGG   1685

BSNT_05370___   1686 CATGGACGACTCTACTCCAATCCAAAGCAAAATGGTATCTCGCGCGGTTG   1735
                     .|||||.|||.||||.||.||||||||.||||||||.|||...||.||||
BPUM_3178___s   1686 TATGGATGACACTACGCCTATCCAAAGTAAAATGGTGTCTAAAGCCGTTG   1735

BSNT_05370___   1736 AATCGTCTCAAAAACGAGTCGAAGGCAATAACTTCGATTCTCGTAAACAG   1785
                     ||||.|||||||||||.||.||.|||||.|||||.|||||.|||||||||
BPUM_3178___s   1736 AATCATCTCAAAAACGTGTTGAGGGCAACAACTTTGATTCACGTAAACAG   1785

BSNT_05370___   1786 CTTCTGCAATATGATGATGTTCTCCGCCAGCAGCGTGAGGTCATTTATAA   1835
                     ||||||||||||||.|||||.||.||.|||||||||||.||.|||||.||
BPUM_3178___s   1786 CTTCTGCAATATGACGATGTGCTTCGTCAGCAGCGTGAAGTGATTTACAA   1835

BSNT_05370___   1836 GCAGCGCTTTGAAGTCATTGACTCTGAAAACCTGCGTGAAATCG-TTG--   1882
                     |||||||||||||||.|||||.|||||.||    |.|.|||||| |||  
BPUM_3178___s   1836 GCAGCGCTTTGAAGTTATTGATTCTGATAA----CTTAAAATCGATTGTG   1881

BSNT_05370___   1883 -AAAATATGATCAAGTCTTCTCTCGAACGCGCAATTGCAGCCTATACGCC   1931
                      ..||||||||..|||||||..|.||.|||||..|||...|.||||||||
BPUM_3178___s   1882 ATCAATATGATTCAGTCTTCAATTGAGCGCGCTGTTGGTTCTTATACGCC   1931

BSNT_05370___   1932 AAGAGAAGAGCTTCCTGAGGAGTGGAAGCTTGACGGTCTAGTTGATCTTA   1981
                     .|.||||||||||||.||.||.|||||.||.||.||.||.|||||..|.|
BPUM_3178___s   1932 GAAAGAAGAGCTTCCAGAAGAATGGAAACTAGATGGGCTTGTTGAATTAA   1981

BSNT_05370___   1982 TCAACAC-AACTTATCTTGATGAAGGTGCGCTT---GAGAAGAGCGATAT   2027
                     ||||||| ||| |||.|.||||||||.||..||   |..|||   |||||
BPUM_3178___s   1982 TCAACACGAAC-TATTTAGATGAAGGAGCCATTTCGGTTAAG---GATAT   2027

BSNT_05370___   2028 CTTCGGGAAAGAACCGGATGAAA-----TGCTTGAGCTCATTATGGATCG   2072
                     .|.|||.||||||.|.|||||||     |.||     |||||||||||||
BPUM_3178___s   2028 TTACGGTAAAGAAGCAGATGAAATCACCTCCT-----TCATTATGGATCG   2072

BSNT_05370___   2073 CATCATCACAAAATATAATGAGAAGGAAGAGCAATTCGGCAAAGAGCAAA   2122
                     .||.|....||||||..|||..||.|||||...||..|||.|.||.||||
BPUM_3178___s   2073 TATTAAAGAAAAATACGATGCAAAAGAAGAAACATATGGCGATGAACAAA   2122

BSNT_05370___   2123 TGCGCGAATTCGAAAAAGTTATCGTTCTTCGTGCCGTTGATTCTAAATGG   2172
                     ||||.|||||.||||||||.||||||||||||||.||.|||||.||.|||
BPUM_3178___s   2123 TGCGAGAATTTGAAAAAGTCATCGTTCTTCGTGCGGTGGATTCAAAGTGG   2172

BSNT_05370___   2173 ATGGATCATATTGATGCGATGGATCAGCTTCGCCAAGGGATTCACCTTCG   2222
                     |||||||||||.|||||.||||||||.||.||.|||||||||||..|.||
BPUM_3178___s   2173 ATGGATCATATCGATGCAATGGATCAACTGCGTCAAGGGATTCATTTACG   2222

BSNT_05370___   2223 TGCTTACGCGCAGACGAACCCTCTTCGTGAGTATCAAATGGAAGGTTTTG   2272
                     |||.||.||.||.||.||.||.|||||||||||||||||||||||.||||
BPUM_3178___s   2223 TGCGTATGCACAAACAAATCCGCTTCGTGAGTATCAAATGGAAGGATTTG   2272

BSNT_05370___   2273 CGATGTTTGAGCATATGATTGAATCAATTGAGGACGAGGTCGCAAAATTT   2322
                     |||||||||||||||||.|.|..|||||.||.||.||.||.||.||||.|
BPUM_3178___s   2273 CGATGTTTGAGCATATGGTCGCTTCAATCGAAGATGATGTAGCCAAATAT   2322

BSNT_05370___   2323 GTGATGAAAGCTGAGATTGAAAACAATCTGGAGCGTGAAGAGGTTGTACA   2372
                     ||..|||||.|.||.||..|||||||..|.|||||||||||.||.||.||
BPUM_3178___s   2323 GTCTTGAAATCAGAAATCCAAAACAACTTAGAGCGTGAAGAAGTCGTTCA   2372

BSNT_05370___   2373 AGGCCAAACAACAGCTCATCAGCCGCAAGAAGGCGACGATAACAAAAAAG   2422
                     |||.||||||||||||||||||||.|||||.||.||.||..|.||.|.||
BPUM_3178___s   2373 AGGGCAAACAACAGCTCATCAGCCTCAAGAGGGTGATGAGGAGAAGACAG   2422

BSNT_05370___   2423 CAAAGAAAGCA-CCGGTTCGCAAAGTGGTTGATATCGGCCGAAATGCCCC   2471
                     ..|| ||||.| |||||.||.||||||||.||.||.||.|||||..|.||
BPUM_3178___s   2423 TGAA-AAAGAAGCCGGTACGTAAAGTGGTAGACATTGGTCGAAACTCACC   2471

BSNT_05370___   2472 ATGCCACTGCGGAAGCGGGAAAAAATATAAAAATTG--CTGCGGCCGTAC   2519
                     |||.||||||||||||||.||.||||||||||||||  .|| ||..| ||
BPUM_3178___s   2472 ATGTCACTGCGGAAGCGGCAAGAAATATAAAAATTGTCATG-GGAAG-AC   2519

BSNT_05370___   2520 TGAATAG   2526
                     .|||||.
BPUM_3178___s   2520 AGAATAA   2526


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