Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05389 and BPUM_3194
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_05389___comFC.1.24716.seq
# -bsequence dna-align/BPUM_3194___comFC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05389___comFC-BPUM_3194___comFC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05389___comFC-BPUM_3194___comFC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05389___comFC
# 2: BPUM_3194___comFC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity: 426/854 (49.9%)
# Similarity: 426/854 (49.9%)
# Gaps: 298/854 (34.9%)
# Score: 983.5
#
#
#=======================================
BSNT_05389___ 1 ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTG-TTTATTAT 49
.||||||| .|.||| |
BPUM_3194___c 1 ---------------------------------TTGATCTGCCTGATT-T 16
BSNT_05389___ 50 GTGATTCGCA-ATTTTCTCA-AGATGTTACATGGAGAGCCCTTTTTTTAC 97
|||| .|.| ||.||.||| ...|.|||||||||.|.|..|..||.||.
BPUM_3194___c 17 GTGA--GGGACATGTTGTCACTCCTTTTACATGGAAATCATTACTTCTAT 64
BSNT_05389___ 98 TAAAGCCTGATGAAAAGGTTTGT-TAT-TCTTGCA--GAAGCA--AATTA 141
|||| |||||| |.|| ||| |.|.||| .||||| |.|||
BPUM_3194___c 65 TAAA---TGATGA------TCGTCTATGTATAGCATGTAAGCATCACTTA 105
BSNT_05389___ 142 AAGAAAATCACAGGACATATCTGCCC--CCTGTGCG-----GCAGAC--- 181
.|.|||||.|.|.|.|..||.||.|| |.||||.| ||||.|
BPUM_3194___c 106 GAAAAAATTAAACGTCCGATTTGTCCAGCTTGTGGGAGAGCGCAGTCGAA 155
BSNT_05389___ 182 --CTCAAT----------CTGTTCATGCCGTATGCAGGGATTGCGAGGTG 219
.||||| ||||||.|| |
BPUM_3194___c 156 TGATCAATTATGTCAAGACTGTTCCTG----------------------G 183
BSNT_05389___ 220 TGGAGAACAAGGATCAGA------GACAGT--TTGCTATTGCGTCAAAAC 261
|||| ||.||.|..|.|| .||||| |||..| ||||.
BPUM_3194___c 184 TGGA-AAGAACGCCCTGATTCTACTACAGTACTTGTGA-------AAAAT 225
BSNT_05389___ 262 CGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTT 311
.|.||.||.||..|.||.||.|||.||||||||||....||.|||||.||
BPUM_3194___c 226 AGGTCTGTCTATGCTTACAACGATTTGATGAAAGATGTCCTTTCCCGCTT 275
BSNT_05389___ 312 TAAATTTAGAGGAGATGCAG-----------------AAATCATAAATGC 344
||||||..||||.|||.||| ||| || |.||||
BPUM_3194___c 276 TAAATTCCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAA-CA-AGATGC 323
BSNT_05389___ 345 ---------ATTTAAAAGTGATTTTTCTTCAACCTTTTC----TAAGGTT 381
||||||..| || ||||||| .|||
BPUM_3194___c 324 CCAAGCAGTATTTAAGCG--------CT----CCTTTTCAATGAAAG--- 358
BSNT_05389___ 382 TACCCCGATAAGCATTTTGTTCTTGTACCTATTCCGCTGAGCAAGGAACG 431
||.| |||.||..|.||.|||||..|.||.||.|||.|
BPUM_3194___c 359 ---------AACC----TGTGCTCATCCCAATTCCTTTAAGTAAAGAAAG 395
BSNT_05389___ 432 GGAAGAAGAGCGCGGATTTAACCAGGC------AC-AGCT--CTTGGCAG 472
..||.|.||..|.||.|||||.|||.| || .||| ||| |
BPUM_3194___c 396 ACAAAAGGAAAGAGGGTTTAATCAGTCCGTCATACTTGCTTCCTT----G 441
BSNT_05389___ 473 AATGTTTAGACCG-GCCTTCCCACCATCCCCTCATTCGCCTGAATAAT-- 519
|.||.|.|| ||| .|||| ||.||.||.| |||| |||
BPUM_3194___c 442 ATTGGTCAG-CCGATCCTT-----CAGCCGCTTA------TGAA-AATAC 478
BSNT_05389___ 520 ----GAG-AAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTCAGAG 564
.|| ||||||||.|||||||||||||..|||||
BPUM_3194___c 479 ACCAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACG------------- 515
BSNT_05389___ 565 CGCATTTTTGATACAAAA---AAT------AATTCAGCAGA-AGGT---- 600
|||.||| ||||| ||| |||..|||||| ||.|
BPUM_3194___c 516 -----TTTAGAT-CAAAAAGGAATGTTTCAAATCAAGCAGACAGATGCGA 559
BSNT_05389___ 601 --------ATGAATATCATTTTAATAGACGATCTTTATACAACAGGCGCC 642
|.|.||||.||.||.||.|||||..||||||||||.||.||.
BPUM_3194___c 560 TCATTCAAAGGGATATTATCTTGATTGACGACATTTATACAACGGGGGCT 609
BSNT_05389___ 643 ACCTTGCACTTCGCAGCCCGCTGCTTATT------------AGA-----A 675
|| |||| ||| |
BPUM_3194___c 610 AC-----------------------TATTTATGATGCTGCGAGAATTTTA 636
BSNT_05389___ 676 AAAGGAAAAGCCGCTTC----AGTG--TCATCTTTTACCTTGATCAGAAG 719
|||| ||||.|.|.| |||| ||.||||||||.||.|||.|.||
BPUM_3194___c 637 AAAG---AAGCGGGTGCCAAAAGTGTTTCCTCTTTTACGTTAATCCGTAG 683
BSNT_05389___ 720 CTAA 723
.|||
BPUM_3194___c 684 TTAA 687
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