Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05390 and BPUM_3195

See Amino acid alignment / Visit BSNT_05390 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:01
# Commandline: needle
#    -asequence dna-align/BSNT_05390___comFB.1.24716.seq
#    -bsequence dna-align/BPUM_3195___comFB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05390___comFB-BPUM_3195___comFB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05390___comFB-BPUM_3195___comFB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05390___comFB
# 2: BPUM_3195___comFB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 315
# Identity:     189/315 (60.0%)
# Similarity:   189/315 (60.0%)
# Gaps:          39/315 (12.4%)
# Score: 473.0
# 
#
#=======================================

BSNT_05390___      1 ATGCTTGTCAATTCAAAAGAAATCGTAATGAAAGAACTGCTCGACCGATA     50
                     |||||..|||||.|||||||||...||.|.||.|||.|.|||.|.|.|||
BPUM_3195___c      1 ATGCTACTCAATGCAAAAGAAACACTACTCAAGGAAATCCTCTATCAATA     50

BSNT_05390___     51 TATGGACCAGCTTCATATGGCCTGT-ACT-TGCCAA--GTATGCCAAAAC     96
                     |.|..||||..|..|.|||...||| ||| ||..||  ||||    |.|.
BPUM_3195___c     51 TCTAAACCAATTAAACATGATTTGTCACTGTGAAAAGTGTAT----AGAA     96

BSNT_05390___     97 GATGTATTGGCACTTTCTTTAAACAAAGTGAGTCCATC-CTACGTTACTG    145
                     ||||||||.||..|.||..|.||..||||||..|| || .||..|.||.|
BPUM_3195___c     97 GATGTATTAGCGATCTCACTGAATCAAGTGAAGCC-TCAGTATATAACAG    145

BSNT_05390___    146 ATTTTAAAAAGATCGCATATACGAAAGCTGAGCTGGTAGATAAACAAAAA    195
                     ||.|.||.||.||..|.||.|..|||.|||||.||||.||.|||||.||.
BPUM_3195___c    146 ATATCAATAAAATATCTTACAGTAAATCTGAGATGGTGGACAAACAGAAG    195

BSNT_05390___    196 AACACAGCAATGCTTGTCATTTTGGCTGAATCTGCTGCAGTAGTTTCAGA    245
                     ||.|||||.|||||.||||||.|..|.|||.|.|||.||...||.||.|.
BPUM_3195___c    196 AATACAGCCATGCTGGTCATTCTCACAGAAGCCGCTTCAAAGGTCTCCGC    245

BSNT_05390___    246 GAGTCCA---AGCGATTTATGTCAAA--------CGAAGCAGGAGGAGGC    284
                     ...||||   .||||        |||        |||...|..|||    
BPUM_3195___c    246 ATTTCCACGGTGCGA--------AAACCGTCTGCCGATAAATAAGG----    283

BSNT_05390___    285 ATTCATA--AACTGA    297
                         |||  ||.|||
BPUM_3195___c    284 ----ATAACAATTGA    294


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