Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05393 and BPUM_3197

See Amino acid alignment / Visit BSNT_05393 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:01
# Commandline: needle
#    -asequence dna-align/BSNT_05393___yviA.1.24716.seq
#    -bsequence dna-align/BPUM_3197___degV.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05393___yviA-BPUM_3197___degV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05393___yviA-BPUM_3197___degV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05393___yviA
# 2: BPUM_3197___degV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 868
# Identity:     627/868 (72.2%)
# Similarity:   627/868 (72.2%)
# Gaps:          47/868 ( 5.4%)
# Score: 2164.5
# 
#
#=======================================

BSNT_05393___      1 ATGAATATTGCAGTCGTAACAGACAGCACGGCATATATTCCGAAAGAAAT     50
                     |||||.||.||.||.|||||||||||.||.||.|||||.||..||||..|
BPUM_3197___d      1 ATGAAAATAGCCGTTGTAACAGACAGTACTGCTTATATACCACAAGAGCT     50

BSNT_05393___     51 ACGTGAACAACATCAGATACATATGATCCCTCTCCAGGTTGTTTTTAGGG    100
                     ||||||..|||||||.||.||||||||||||||..|.||..|||||.|..
BPUM_3197___d     51 ACGTGATAAACATCATATTCATATGATCCCTCTTAATGTCATTTTTGGCA    100

BSNT_05393___    101 AGGAGACTTACCGTGAAGAAATTGAGTTGGACTGGAAAAGCTTTTACGAA    150
                     |.||..|.||||||||||||||.||..||||.|||||.|..|.|||.|||
BPUM_3197___d    101 ACGAATCATACCGTGAAGAAATAGAAATGGATTGGAAGATTTATTATGAA    150

BSNT_05393___    151 GAAGTGAAAAAACATAATGAGCTCCCGACGACTTCTCAGCCGCCAATCGG    200
                     |||||.|||||.|||||.||.||.||.||.||.||||||||..|..||||
BPUM_3197___d    151 GAAGTCAAAAAGCATAAAGAACTTCCAACCACCTCTCAGCCTGCTTTCGG    200

BSNT_05393___    201 CGAGCTGGTTGCGTTGTATGAAGAGCTTGGCAAGT----CTTATGATGCG    246
                     .||.||..|.|..||.||||||.||||    ||||    |.||||||||.
BPUM_3197___d    201 TGAACTAATAGAATTATATGAAAAGCT----AAGTGAAACATATGATGCC    246

BSNT_05393___    247 GTTATCAGTATCCATCTTTCCAGCGGGATCAGCGGAACATTCAGCAGTGC    296
                     ||.||.|||||.||.|||||.|||||.||.||.|||||||..|..|||||
BPUM_3197___d    247 GTGATTAGTATTCACCTTTCTAGCGGAATTAGTGGAACATATAATAGTGC    296

BSNT_05393___    297 AGCAGCGGCTGATTCGA--TGGTCGACAATATTGATGTGTATCCATTTGA    344
                     |||..|.||..||  ||  |.||.|||...|||||..|.|||||.|||||
BPUM_3197___d    297 AGCCTCAGCAAAT--GACCTAGTTGACGGAATTGACATTTATCCGTTTGA    344

BSNT_05393___    345 CTCAGAGATCAGCTGCTTGGCTCAAGGCTTTTATGCCCTTAAAGCTGCTG    394
                     ..||||.|..|||||..||||.|||||.|||||||...|..|||||||||
BPUM_3197___d    345 TACAGAAACTAGCTGTATGGCGCAAGGTTTTTATGTGATAGAAGCTGCTG    394

BSNT_05393___    395 AATTAATCAAAAACGGAGCATCATCGCCGGAAGATATTA-------TAAA    437
                     ||..|||..||...||.||.||..|.|..|||| |.|||       |.||
BPUM_3197___d    395 AAAAAATTCAAGCTGGTGCTTCTCCACAAGAAG-TGTTAGCCCATCTCAA    443

BSNT_05393___    438 AGAACTGGAAGA-AATGAAAAAAACAGTTCGAGCTTATTTTATGGTAGAT    486
                     ..|.|||.|||| |||.|.||          ||||||||||||||||||.
BPUM_3197___d    444 CTACCTGAAAGAGAATCAGAA----------AGCTTATTTTATGGTAGAC    483

BSNT_05393___    487 GACTTAGCTCATCTTCAGCGCGGCGGGCGATTAAGCAGCGCCCAAGCCTT    536
                     ||.|||.|||||.|.||..|.|||||..||||||...|.||.||.||.||
BPUM_3197___d    484 GATTTAACTCATTTACAAAGAGGCGGAAGATTAAATGGTGCTCAGGCTTT    533

BSNT_05393___    537 CATTGGTAGTCTTCTAAAGGTAAAGCCTATCCTTCATTTTGACAATAAGG    586
                     ||||||.||.||..||||||||||||||||.||.|||||||||||.|||.
BPUM_3197___d    534 CATTGGGAGCCTCTTAAAGGTAAAGCCTATACTGCATTTTGACAACAAGC    583

BSNT_05393___    587 TAATTGTGCCTTTTGAGAAGATTCGCACACGTAAAAAAGCAATTTCGCGA    636
                     |||||||.||||||||||||||||||||||||||||||||.|||||.||.
BPUM_3197___d    584 TAATTGTCCCTTTTGAGAAGATTCGCACACGTAAAAAAGCTATTTCACGT    633

BSNT_05393___    637 ATTTATGAGCTTTTAGACGAAGATGCGA----GTAAAGGGT-TGCCTATG    681
                     ||.|.|||..|.||.||||||||||| |    ||    ||| |.||.|||
BPUM_3197___d    634 ATGTTTGAATTATTTGACGAAGATGC-ATCTCGT----GGTGTCCCGATG    678

BSNT_05393___    682 CGAGCTGCTGTTATCCACGCTAATCGAGAGGAAGAAGCAG-CGAAAATCA    730
                     .||||..|..|.||.||.|.||||.||||.|||||||.|| || ||.|.|
BPUM_3197___d    679 AGAGCAACACTGATACATGGTAATAGAGAAGAAGAAGTAGACG-AATTAA    727

BSNT_05393___    731 TTGAAGAGCTT-TCTGCAAAATATCCTCATGTTGAATTTTATAACAGCTA    779
                     ||| .|..||| ||.|.|||||||||||||||||||||||||||.|||||
BPUM_3197___d    728 TTG-CGCACTTATCAGAAAAATATCCTCATGTTGAATTTTATAAAAGCTA    776

BSNT_05393___    780 TTTTGGCGCGGTAATCGGCACTCATTTGGGTGAAGGTGCGTTAGGAATTT    829
                     ||||||.||.|||||.|||||||||.|.||.|||||..|.||||...||.
BPUM_3197___d    777 TTTTGGTGCCGTAATTGGCACTCATCTAGGCGAAGGCTCTTTAGCTCTTG    826

BSNT_05393___    830 GCTGGTGT-TTTAAATAA    846
                     ||||| || .|||.||||
BPUM_3197___d    827 GCTGG-GTGATTAGATAA    843


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05393 and BPUM_3197

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
