Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05409 and BPUM_3203

See Amino acid alignment / Visit BSNT_05409 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:02
# Commandline: needle
#    -asequence dna-align/BSNT_05409___tuaH.1.24716.seq
#    -bsequence dna-align/BPUM_3203___tuaH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05409___tuaH-BPUM_3203___tuaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05409___tuaH-BPUM_3203___tuaH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05409___tuaH
# 2: BPUM_3203___tuaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1299
# Identity:     824/1299 (63.4%)
# Similarity:   824/1299 (63.4%)
# Gaps:         204/1299 (15.7%)
# Score: 2326.0
# 
#
#=======================================

BSNT_05409___      1 GTGGAAACAAAAG---AAGCA------ATCATTCATGTCATCGTTGCCAC     41
                     |||   |.|||.|   |||||      |||||.|||||..||||.||.||
BPUM_3203___t      1 GTG---ATAAAGGTGAAAGCAGACTCGATCATACATGTTGTCGTAGCGAC     47

BSNT_05409___     42 TGCTGAATGGGGAAAAGACCAATTGAGATACAGAAGGCACCGGCTGGCAG     91
                     .|..|||||||||.|.|||..|.|.||.||||||.||||.||||||||.|
BPUM_3203___t     48 GGGAGAATGGGGACAGGACGGACTAAGGTACAGACGGCATCGGCTGGCCG     97

BSNT_05409___     92 AATTTTTAGCTGCT----CAGGAGGAAACGAAGGAAGTTATTTGGGTATG    137
                     |||||.||||..||    ||    |||||.||.|||||.||.||||||||
BPUM_3203___t     98 AATTTCTAGCATCTGATCCA----GAAACAAAAGAAGTCATCTGGGTATG    143

BSNT_05409___    138 TCCGGC-TC--CGCGTGCCCAAGGGAAAGAG-----TTTCAGGAAGTCCA    179
                     .|||.| ||  |.|||        .|.|.||     ||||    ||.|||
BPUM_3203___t    144 CCCGTCATCATCTCGT--------CATATAGCTCCCTTTC----AGCCCA    181

BSNT_05409___    180 T------TCTGGCATCAGGCAATTCGCTGTCAAAGACC----------TG    213
                     |      ||  |.||.|.||||||          ||||          ||
BPUM_3203___t    182 TAACCGATC--GAATGAAGCAATT----------GACCATTCCCGATGTG    219

BSNT_05409___    214 CTGCAGAAAAAAATGTTTCGTTTCGGACGATATACAGATGTCTTTTACAA    263
                     ||..|||..|||.|.|||||.||.||.||||||..|||..|.||.||.|.
BPUM_3203___t    220 CTCAAGAGCAAATTATTTCGCTTTGGTCGATATCAAGACATGTTCTATAT    269

BSNT_05409___    264 ACATAAGCTCTCCCCATTACTCGATGAGCTTACACCTGCTTCTGCA----    309
                     .|||||..|.|||||..|.||.||       |||..|||..|.|.|    
BPUM_3203___t    270 TCATAAATTATCCCCTCTTCTTGA-------ACATTTGCGGCAGGAGGAA    312

BSNT_05409___    310 ---AACGGTGAACGCTG-CTGTTTATGGTACACGTTTCCCGGATTCCCGC    355
                        || ||.||..||.| .|||||||||||.||||||||.||.||.||||
BPUM_3203___t    313 AAGAA-GGGGATTGCCGTTTGTTTATGGTATACGTTTCCGGGCTTTCCGC    361

BSNT_05409___    356 TGCTGTCTTCGCTGTATCCT----TGGGATCAGGTCATTTATGACTGCAG    401
                     |..|.||||  ||.|||  |    |||.|.||..|..|.|||||.|||||
BPUM_3203___t    362 TCTTATCTT--CTTTAT--TTGAATGGAAACATATTGTCTATGATTGCAG    407

BSNT_05409___    402 TGACTTATGGGCTGCGCCGATCAGCGGC--CGATCAAATCTGCTGTCTGA    449
                     ||||.|.||||..|.||||||.||||||  |.||.|.|||  ||.|||.|
BPUM_3203___t    408 TGACCTGTGGGGAGAGCCGATAAGCGGCAACCATAACATC--CTTTCTTA    455

BSNT_05409___    450 ATTCCGGCGAAAA----GTCA---TTAAAACGGCAGAGCTGA----GAAT    488
                     ..|..|||    |    ||||   |||||   |||||    |    ||||
BPUM_3203___t    456 TATGAGGC----AGCGTGTCATTGTTAAA---GCAGA----AAATCGAAT    494

BSNT_05409___    489 TATACAACGAGCAGATTCA--ATAACCTGTTCATCAGATTATCTTCACAA    536
                     |||..||...|||.|  ||  ||.||.||.||.||..|.|||.|.|||.|
BPUM_3203___t    495 TATTAAATACGCACA--CAGCATTACATGCTCTTCTCAATATTTACACGA    542

BSNT_05409___    537 GGAAGTAGACAAAAAACTGACTGCAGGACGAGA----AAAG----GTTCA    578
                     ..||.|   |||||||| |.|||..||  ||||    ||||    |||  
BPUM_3203___t    543 TCAAAT---CAAAAAAC-GTCTGATGG--GAGAACCGAAAGATGTGTT--    584

BSNT_05409___    579 TACAGTGGAAAACGGTGTGGAGTATGAGCTGTTTTCTGCAAATAAACAAG    628
                     ||||||||||||.|||||.|||||.||..||||   |||.|| ||.|||.
BPUM_3203___t    585 TACAGTGGAAAATGGTGTCGAGTACGATGTGTT---TGCGAA-AAGCAAT    630

BSNT_05409___    629 CTCCCG---ATCGCAG-TATACTGCAGGGGAGAGAAGGAACAGTGTTAGG    674
                     ||.|||   |..|.|| |.|.|||.|.||.|||||||||||.|||.|.||
BPUM_3203___t    631 CTTCCGTGTAAAGAAGATGTGCTGGAAGGAAGAGAAGGAACCGTGCTCGG    680

BSNT_05409___    675 TTTTATCGGCGGAATTAAACCGAAGCTCGATTTTAAAATGATTGAAGAAG    724
                     |||||||||.|||||.|||||.||.|||||||||.|.|||||.|..||||
BPUM_3203___t    681 TTTTATCGGAGGAATCAAACCAAAACTCGATTTTGACATGATGGCTGAAG    730

BSNT_05409___    725 CCGC---CCTGCAAAAGCCTGATTGGACATTTTTATGGGTTGGCCCGGAT    771
                     |.||   |.|||   .||||||||||||||||||||..||.||.||||||
BPUM_3203___t    731 CTGCTCGCATGC---GGCCTGATTGGACATTTTTATTTGTCGGTCCGGAT    777

BSNT_05409___    772 GCCACCAATGGTGACGTTTCGTTTCAAGA-GCTGCTGAGGCTTCCCAATG    820
                     |..||.|||||.||....||.|||||..| || |||.|..||.||.||||
BPUM_3203___t    778 GGAACGAATGGAGATCCATCTTTTCAGCATGC-GCTTAAACTGCCTAATG    826

BSNT_05409___    821 TTATATGGACCGG-CCCGGCGGATCCGAAAGAAGTTCC-GCATTTTATGG    868
                     |.||.|||||.|| .|.|..|.|.|.| |||||||.|| || ||.||||.
BPUM_3203___t    827 TGATTTGGACAGGAGCTGTTGCAGCAG-AAGAAGTGCCTGC-TTATATGA    874

BSNT_05409___    869 AGCTTATCGACATTGGCATCATGCCTTATAAACAATCACCGTATAATCAA    918
                     ||||.||.||..|.||.||.|||||.||.||||||||.||.|||||||||
BPUM_3203___t    875 AGCTGATTGATGTAGGGATGATGCCATACAAACAATCCCCTTATAATCAA    924

BSNT_05409___    919 GCTGTGTTTCCACTGAAACTATTTGAATTTTTAGCGGCAGGAAAACCTGT    968
                     ||.|||||.|||||.||.||.|.||||||||||||.||.||||.|||.||
BPUM_3203___t    925 GCGGTGTTCCCACTCAAGCTTTATGAATTTTTAGCTGCTGGAATACCGGT    974

BSNT_05409___    969 CGTCGGCTCTAATCTTCCGTCAACCTCAAAAATGC---AAAAGCCGTATG   1015
                     .|||||.|..|||||.||.||||   |..|||.||   ||.||..|.|||
BPUM_3203___t    975 TGTCGGTTTAAATCTCCCTTCAA---CGGAAAGGCTAAAAGAGAAGAATG   1021

BSNT_05409___   1016 TATACGAATATGTAGAAGGTGATCATCCAATTG---ATTTTATAGCAGCT   1062
                     |.||.||||||.|||..||.|||.||||   ||   ..||.||||.|||.
BPUM_3203___t   1022 TGTATGAATATTTAGTGGGCGATGATCC---TGCGCTCTTCATAGAAGCC   1068

BSNT_05409___   1063 TGTGAAAAAGTTCTCGAACAAAACGGA-GAC----------GAAACCTAT   1101
                     ||...||||||..|| |.|||||..|| |||          ||.||||| 
BPUM_3203___t   1069 TGCCTAAAAGTGATC-AGCAAAAAAGACGACACGGCTTTTAGACACCTA-   1116

BSNT_05409___   1102 AAAGAAATGCGCCGAAACATCGCTCGC----ACACAAGATTGGAATTGC-   1146
                     |.|.|||   |||||          ||    |.|.||||||||.| .|| 
BPUM_3203___t   1117 AGACAAA---GCCGA----------GCGAAGAAAAAAGATTGGCA-CGCG   1152

BSNT_05409___   1147 TTATTTAGACAAATTAT-GAAATATACAGGGATTCAAAAACATGCGTAG   1194
                     .|.||.|.|.|.||..| |||.|| ||....|||.||.||.|.||.||.
BPUM_3203___t   1153 CTGTTCACAAACATGGTGGAACTA-ACGAATATTAAAGAAAACGCATAA   1200


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