Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05412 and BPUM_3204

See Amino acid alignment / Visit BSNT_05412 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:02
# Commandline: needle
#    -asequence dna-align/BSNT_05412___tuaG.1.24716.seq
#    -bsequence dna-align/BPUM_3204___tuaG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05412___tuaG-BPUM_3204___tuaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05412___tuaG-BPUM_3204___tuaG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05412___tuaG
# 2: BPUM_3204___tuaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 781
# Identity:     542/781 (69.4%)
# Similarity:   542/781 (69.4%)
# Gaps:          47/781 ( 6.0%)
# Score: 1681.0
# 
#
#=======================================

BSNT_05412___      1 ATGACGAGGCAA-AAACCTTTAATCTCTGTCATTACGCCTTCCTATAACG     49
                     .|||    .||| .||||.|||.|.||..|||||||.|||.|.|||||.|
BPUM_3204___t      1 GTGA----ACAATCAACCGTTAGTATCCATCATTACACCTGCGTATAATG     46

BSNT_05412___     50 CGGA--GGAATATATCGAAAAAACCA-TTCAGTCCGTCTTAAATCAGACG     96
                     ||||  |..||.||.||.|.|   || ||||.||||||.|....||.||.
BPUM_3204___t     47 CGGAACGTTATTTAACGGATA---CAGTTCATTCCGTCCTTGCCCAAACC     93

BSNT_05412___     97 TTTTCCGACTGGGAAATGATTATTGCGGATGATTGCTCAACAGATGGGAC    146
                     |.||||.|.|||||..||||.|||||.||||||||.||.||||||||.||
BPUM_3204___t     94 TATTCCAATTGGGAGCTGATCATTGCAGATGATTGTTCTACAGATGGAAC    143

BSNT_05412___    147 AAGAGACATTTTGAAGCGCTATGAAG--AAGATGATGACCGGATCCATGC    194
                     .|||.|..|.||  ||.|...|.|||  |||..||.|||.|.|||.|.|.
BPUM_3204___t    144 TAGAAAGCTATT--AGGGGATTTAAGTCAAGCGGACGACAGAATCAACGT    191

BSNT_05412___    195 TATTTTTCTGAAAGAAAATCAAGGTGCTGCAGCTGCACGAAATGCGGCGC    244
                     .||||.|.|..|.||||||...||.|||||...|||..||||.||.||  
BPUM_3204___t    192 CATTTATTTAGAGGAAAATGGGGGAGCTGCCATTGCTAGAAACGCAGC--    239

BSNT_05412___    245 TCAGCAAA---GCCGAAGGGCACTATGTCGCATTTTTGGACAGCGATGAT    291
                      ||.||||   ||..||||.|.||.|.||||.|||.|.||||||||||||
BPUM_3204___t    240 -CATCAAACAGGCAAAAGGACGCTTTATCGCTTTTCTAGACAGCGATGAT    288

BSNT_05412___    292 GTATGGAAAGCAGA-AAAGCTGGAAAAGCAGCTTGCCTTCATGAGGAAGC    340
                     .|.||||||| ||| .|||||.|||||.|||.|.|.|||||||..||...
BPUM_3204___t    289 ATGTGGAAAG-AGACGAAGCTCGAAAAACAGGTAGACTTCATGCTGACAA    337

BSNT_05412___    341 ATCAGCATGCTTTCACATTTACGGCATACGAGCTGAT--CAGCCAAGACG    388
                     ||.|..||||.||.||||||||||||||.||..|.||  |||  ||.|||
BPUM_3204___t    338 ATGATTATGCCTTTACATTTACGGCATATGACATCATTGCAG--AAAACG    385

BSNT_05412___    389 GCAAACCACTTCATAAAACCATTCA-TGCACCCATGAGCCTT--ACATAT    435
                     |..|||||.||.|.|||||| .||| |||.||...||| .||  || |||
BPUM_3204___t    386 GAGAACCATTTGAAAAAACC-GTCACTGCGCCAGCGAG-ATTGGAC-TAT    432

BSNT_05412___    436 GATGATGTATTAAAAAATACGATTATTGGTTGCTTGACGGTAATGATTGA    485
                     .||||.|..||.|||||.||.|||||.||.||.||.|||||.|||.||||
BPUM_3204___t    433 AATGAAGCCTTGAAAAACACCATTATCGGCTGTTTAACGGTCATGCTTGA    482

BSNT_05412___    486 CAGGGAGCAAACCGGT--GATATCCGT----ATGCCGAATATTAGAACCC    529
                     ....||  |||  |||  ||.||  ||    |||||.||.|||.|.||..
BPUM_3204___t    483 TCTTGA--AAA--GGTAGGACAT--GTGGAAATGCCAAACATTCGCACAA    526

BSNT_05412___    530 GTCAGGATTTGGCGACATGGTTATCCGTATTAAAGCGGGGATTCAAGGCA    579
                     |.||||||||.||.||||||.|.||..|||||||..|.||.||.|..||.
BPUM_3204___t    527 GACAGGATTTAGCTACATGGCTGTCTATATTAAAAAGAGGGTTTACAGCC    576

BSNT_05412___    580 TACGGACTGAACGAACCCCTCGCCGAATACCGCATCGTT-GAAACATCGA    628
                     ||.||..|||..|||||.|||...|||||.||||||||| |.||| ||.|
BPUM_3204___t    577 TATGGGATGAGTGAACCGCTCAGTGAATATCGCATCGTTGGGAAC-TCCA    625

BSNT_05412___    629 TTTCCAGCAACAAATGGAAGGCTGCGAAAAAAACGTGGTTTGTCTACAGG    678
                     |.||.||.|||||.|||||.||.||||||||||||||||||||||||||.
BPUM_3204___t    626 TCTCTAGTAACAAGTGGAAAGCAGCGAAAAAAACGTGGTTTGTCTACAGA    675

BSNT_05412___    679 GAGATCGAACGGCTTCATTTTATGAAAGCAACATGGTGTTTTGTTCAATA    728
                     ||.||.||.|.||||||||||.|||||||..|.|||||||||.|.||.||
BPUM_3204___t    676 GAAATTGAGCAGCTTCATTTTGTGAAAGCGTCCTGGTGTTTTATGCACTA    725

BSNT_05412___    729 TGCAAAAAACGCGGTGAAAAAAAGATTATAG    759
                     |||.|.|||.||.|||||.|||.|.|||||.
BPUM_3204___t    726 TGCGACAAATGCTGTGAAGAAACGCTTATAA    756


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05412 and BPUM_3204

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
