Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05413 and BPUM_3205

See Amino acid alignment / Visit BSNT_05413 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:02
# Commandline: needle
#    -asequence dna-align/BSNT_05413___tuaF.1.24716.seq
#    -bsequence dna-align/BPUM_3205___tuaF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05413___tuaF-BPUM_3205___tuaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05413___tuaF-BPUM_3205___tuaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05413___tuaF
# 2: BPUM_3205___tuaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 781
# Identity:     433/781 (55.4%)
# Similarity:   433/781 (55.4%)
# Gaps:         209/781 (26.8%)
# Score: 972.5
# 
#
#=======================================

BSNT_05413___      1 ATGAAT--TTAATCAAACGTATTGCTGGTA---------GAGTGAAAAAG     39
                     |||..|  ||  |||    |||  ||.|.|         ||.|.||||||
BPUM_3205___t      1 ATGTCTGGTT--TCA----TAT--CTAGGATAGGGAAACGAATCAAAAAG     42

BSNT_05413___     40 TTTAT--TGTGGCGATAATTGTGCTTCC--TCTTATTCTTGGT--CTTGT     83
                     |..||  |.||||  |.||..||||.||  ||.|||  |.|||  ||| |
BPUM_3205___t     43 TACATCGTATGGC--TCATACTGCTGCCTATCGTAT--TAGGTGCCTT-T     87

BSNT_05413___     84 GGGCTATTTTATACCGAAGG------GGAGTGTTGCTCCGTCTGATTACA    127
                     ||..|.||||.|.|..||||      |.||       |.||||..|||.|
BPUM_3205___t     88 GGTTTCTTTTTTGCTAAAGGAACTACGCAG-------CAGTCTAGTTATA    130

BSNT_05413___    128 CGGCTACTGTAACGATATCAACCGGAAACTATGGAGAAGCTAAGTACAAC    177
                     |.||..||||.||..|..|...|||.||.||||..||.|....|||.|||
BPUM_3205___t    131 CAGCGGCTGTTACCCTCACTCTCGGTAAATATGATGATGGGGTGTATAAC    180

BSNT_05413___    178 AAT---GCAAAACAAGT-ACCGCTGCTGTTGAAAAACGGAGCTTTTTTAA    223
                     |||   ||   |.|||| ||..|| ||.||.||||.||..||.|||.|||
BPUM_3205___t    181 AATATGGC---AGAAGTGACATCT-CTATTAAAAAGCGATGCCTTTCTAA    226

BSNT_05413___    224 AGGA--TATTTTCCCGGGGATGTCGGAAGAGGATTTGGCGCAGTTGAAAG    271
                     |.||  .|    |.|.|.||||| |.||||           ||..|||||
BPUM_3205___t    227 ATGAAGCA----CTCAGTGATGT-GAAAGA-----------AGAAGAAAG    260

BSNT_05413___    272 AC--GATCTGGTGATTGAAA-------TCAGAACGGATTCGCTTTTTAAT    312
                     ||  |||       .|||||       |||        || |||...|||
BPUM_3205___t    261 ACAGGAT-------ATGAAAACCCGTCTCA--------TC-CTTACCAAT    294

BSNT_05413___    313 --TTAAGCTACACAGGGCCTGACA---------AACAGA-------AAAC    344
                       .|.||.||||||    .|.|||         .||.||       ||..
BPUM_3205___t    295 CAATCAGATACACA----ATTACAGTTGTCGTTCACTGATGCCGATAAGG    340

BSNT_05413___    345 ATCGGATACTTTAG-------GAAAAA----TCAAAGACGCCTATATGAA    383
                     ||||  |.||||.|       |||..|    ||.||.||    ||.|...
BPUM_3205___t    341 ATCG--TGCTTTGGCTGTCGTGAAGCAGGTGTCGAATAC----ATTTCTC    384

BSNT_05413___    384 AGGC--GATAAGGCGCTTTTTTCAAAAAGGGAAGAAGTCATTGAAAATAA    431
                     |.||  |||||.||..|.|||.||||||||.|..|.||.|||||||.| |
BPUM_3205___t    385 AAGCAAGATAAAGCATTATTTACAAAAAGGCAGCAGGTTATTGAAAGT-A    433

BSNT_05413___    432 TATTAAG--GCGCTTGAAGGCGAAACAGTCAGCTCTGATTCAAAAGTTGA    479
                     .||| ||  ||.|||.|||.||||.|.||||||..|||||||||||||||
BPUM_3205___t    434 GATT-AGCTGCACTTCAAGACGAATCGGTCAGCAATGATTCAAAAGTTGA    482

BSNT_05413___    480 CAAACAGCGGTTTTTGTATGAACTTGAA----ACAAGCAAGCTTGATATG    525
                     .|||.|.||.||.||.|||||| |||.|    |||   |||||||..|||
BPUM_3205___t    483 TAAAGAACGATTCTTATATGAA-TTGGAGTCTACA---AAGCTTGGAATG    528

BSNT_05413___    526 AAGGCTGCTGAAGAAATTG-------AGCCCTTGAACGTACTAGAT----    564
                     |||...||   |.|.||||       .||||    |.|||||.|||    
BPUM_3205___t    529 AAGCAGGC---AAAGATTGTCGATCCTGCCC----AAGTACTTGATGAGG    571

BSNT_05413___    565 ------AACCAGGTTGTCGGCATGTC-GCCTAAAAAAAGAGCGGT-ATTG    606
                           ||          |||||||| ||| ||||||.|.||..| .|||
BPUM_3205___t    572 GCAATAAA----------GGCATGTCAGCC-AAAAAACGGGCACTGCTTG    610

BSNT_05413___    607 GGCGTATTG--ATTGG-TTTGG-----CGCTGTCATTTTT----TATTAT    644
                     |||   |||  ||||| |||.|     |||  ||||.|||    |.||| 
BPUM_3205___t    611 GGC---TTGTCATTGGCTTTAGCATCTCGC--TCATGTTTGTCGTCTTA-    654

BSNT_05413___    645 TGTTGTTCCGGAAGTTTTCAGAGAACGTTAA    675
                            ||.|||||.||||.||||..||||
BPUM_3205___t    655 -------CCCGAAGTGTTCAAAGAATCTTAA    678


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