Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05420 and BPUM_3209

See Amino acid alignment / Visit BSNT_05420 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:02
# Commandline: needle
#    -asequence dna-align/BSNT_05420___tuaC.1.24716.seq
#    -bsequence dna-align/BPUM_3209___tuaC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05420___tuaC-BPUM_3209___tuaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05420___tuaC-BPUM_3209___tuaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05420___tuaC
# 2: BPUM_3209___tuaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1374
# Identity:     749/1374 (54.5%)
# Similarity:   749/1374 (54.5%)
# Gaps:         387/1374 (28.2%)
# Score: 1763.5
# 
#
#=======================================

BSNT_05420___      1 TTGAAGGTTCTTTGGATTACCAGTGTTTATCCAAGTAGTCAAAAA---CC     47
                     .|||||||.||.|||.|.||.|||||.|||||   ||||.|||||   ||
BPUM_3209___t      1 ATGAAGGTGCTATGGCTGACAAGTGTATATCC---TAGTGAAAAACATCC     47

BSNT_05420___     48 GGGAGAAGGTGTTTTTCATGAAACACAGGTTCAGGCGTTGTATATGCAGG     97
                     ..|.||||||||.||.||||||||.||.||.||||.|.||...|..||.|
BPUM_3209___t     48 AAGTGAAGGTGTATTCCATGAAACGCAAGTACAGGAGCTGCTCAAACAAG     97

BSNT_05420___     98 GCGTTGATGTGACAGTCATATGTCCATTACCTGTGAACCCTGCTCCTCTG    147
                     |..|..|.|||||.|||||.|||||....||.||.||.||..|...|.||
BPUM_3209___t     98 GAATACAAGTGACCGTCATCTGTCCCAACCCAGTTAATCCACCGATTTTG    147

BSNT_05420___    148 AGGCTGTTGAA----------------AAAAAAGTACCGCCAAACACGAA    181
                     .||.||.||||                |||||.|..|.|||     ||||
BPUM_3209___t    148 CGGATGCTGAAGGCGTCCTATCGGCAGAAAAAGGATCTGCC-----CGAA    192

BSNT_05420___    182 CAGTCCCGGAATATGAAGAAAGAAAAGGTATCCCGGTTTACAGACCACCA    231
                     ||     |||| |||     |||||.||..|..|.||.|||||.||.||.
BPUM_3209___t    193 CA-----GGAA-ATG-----AGAAACGGAGTGACCGTATACAGGCCGCCC    231

BSNT_05420___    232 TATACAGCTCTGCCGGGACAGCTAAAATGGGCTCAGC--------CGCAT    273
                     ||||||||.||.||.||||||||.||||||||.||||        ||.||
BPUM_3209___t    232 TATACAGCACTCCCCGGACAGCTGAAATGGGCACAGCCGAGTAAACGAAT    281

BSNT_05420___    274 CGC------------CGGATCGCAAAGTCAGTATTGAGGACGATCGAGAA    311
                     .||            |||  |||.|.| |||..||       ||      
BPUM_3209___t    282 AGCGGCTTCTGTTCTCGG--CGCTATG-CAGCGTT-------AT------    315

BSNT_05420___    312 GTACAGCCTTG-CGCCGAATCTTATCCATGCCCATTTCGCGATGCCATCC    360
                        ||||  || |.||..||.||||||||||.||.||.||.||||||||.
BPUM_3209___t    316 ---CAGC--TGTCACCAGATTTTATCCATGCGCACTTTGCAATGCCATCT    360

BSNT_05420___    361 GGGGGTGCCGCTGCCGTTATT--GCACAGAGGCTGAAGGTTCCTTATGTT    408
                     ||.||.||.||.||.||.|||  |||.|.|  ..|||..||||||||.||
BPUM_3209___t    361 GGCGGAGCAGCGGCTGTGATTCAGCAAAAA--ACGAAAATTCCTTATCTT    408

BSNT_05420___    409 CTAACTTTGCACGGAAGCGATGTCAATATTTATCCTCATTACAGCAAAGG    458
                     .|.||.||.||.||.||.|||||.||..|.|||||....||.||.|||||
BPUM_3209___t    409 TTGACCTTACATGGCAGTGATGTGAACGTGTATCCGAGCTATAGTAAAGG    458

BSNT_05420___    459 CGCTTTTCGAGCATTTGATATGGCTGTG---CATGCTGCAGCTAAAGTTT    505
                     .||.|.|..|||.|||||.|.|||.|||   ||.||..|.||   ||||.
BPUM_3209___t    459 GGCATATGCAGCCTTTGAAACGGCGGTGAAACAGGCATCGGC---AGTTC    505

BSNT_05420___    506 TGGCTGTCAGCGA------TGCTTTGAAAGCCAAAACAAAAGAAATGACC    549
                     ||.|.||.||.||      ||||   |||   ||.|||||.||.|||| |
BPUM_3209___t    506 TGACGGTGAGTGAAGAGCTTGCT---AAA---AAGACAAATGACATGA-C    548

BSNT_05420___    550 G---------GTGC--TGATT---GCTCGGTGCTTCCTATCGGC-GTCAA    584
                     |         |.||  ||..|   ||||||| .||||..||  | |||  
BPUM_3209___t    549 GAAAGTAGAAGCGCAATGCCTCCCGCTCGGT-ATTCCGCTC--CAGTC--    593

BSNT_05420___    585 CCTGGACAATTTTCAAAAAAACTCCG------CTTCAACACTTGAATTGA    628
                             ||||||.||||     ||      ..||||||..|.|  |.|
BPUM_3209___t    594 --------ATTTTCTAAAA-----CGGAAGAAGATCAACAAGTCA--TCA    628

BSNT_05420___    629 GGGAGAAACTCGGCTTGCC----GACAGACAAAAAATTGCTGACG-----    669
                     ||||.||..|.|||||.||    .|| |||||      |||  ||     
BPUM_3209___t    629 GGGAAAAGTTAGGCTTACCCCTTCAC-GACAA------GCT--CGTTGTC    669

BSNT_05420___    670 TTCGTCGGTCGCTTGGTGAAAG-GAAAGGGTGTAGCCGAGCTGGCTGAAG    718
                     ||||||||.||.||.||.|||| ||||||.|          ||..|||| 
BPUM_3209___t    670 TTCGTCGGCCGATTAGTCAAAGAGAAAGGTT----------TGCTTGAA-    708

BSNT_05420___    719 CGGTCAGGTCGCTTGATGACAGCTACAGAGCTGTATTCATCGGCGATGGA    768
                        |.||     ||||    |||||           |||..||| |||||
BPUM_3209___t    709 ---TTAG-----TTGA----AGCTA-----------TCAGTGGC-ATGGA    734

BSNT_05420___    769 CCGGAG---AAGCAGCATATCCGT----CAAATCGCCGGTGAAAAAG---    808
                      .||.|   ||||||  |.|..||    .||..|.||..||.|||||   
BPUM_3209___t    735 -TGGTGTGAAAGCAG--TTTTTGTTGGAAAAGGCCCCCTTGCAAAAGAGC    781

BSNT_05420___    809 ---CA--------------AT--ATTA-------ATGGGGCAGGT-CTCA    831
                        ||              ||  ||||       |  |||||||| |   
BPUM_3209___t    782 TCACAGAACGGGCTGGAGCATCCATTATACTCCCA--GGGCAGGTGC---    826

BSNT_05420___    832 AACCTTCAAAT-ATC---TGAA----TAT---CTGGCTGCCTCTGATCTG    870
                           |.||| |||   ||||    |||   .||||..||   ||||||
BPUM_3209___t    827 ------CGAATGATCAGGTGAAAGACTATTTAATGGCAACC---GATCTG    867

BSNT_05420___    871 TTTGTGCTCCCTTCGTATTCAGAAGGGATGCCGACTGTTGTCATTGAAGC    920
                     |||..|||.||.||.|||...|||||.|||||.||.||.||..|.||.||
BPUM_3209___t    868 TTTACGCTTCCGTCCTATAGTGAAGGAATGCCAACCGTCGTTCTGGAGGC    917

BSNT_05420___    921 GCTCGCCCTCAAGGTTCCGGTGCTTTGTACGGCG------GTCGGAGGGG    964
                     ||||||..|.||.||.||.||..||      |||      |||||.||..
BPUM_3209___t    918 GCTCGCTTTAAAAGTACCTGTCATT------GCGACAAGAGTCGGTGGTC    961

BSNT_05420___    965 TTCCGTCTTTA--TTCGGAAAGC-ATGAACATCTGC----TGATCAAGCC   1007
                     ||||..|.|||  |||   .||| ||.||||.||||    ||||      
BPUM_3209___t    962 TTCCAACCTTATTTTC---TAGCTATCAACACCTGCTCGTTGAT------   1002

BSNT_05420___   1008 CCGC--TCGGCTTCAAGCA--TTACAGAAGC--TGTCA------------   1039
                     ||||  |||||  .||.||  |.|.|||.||  | |||            
BPUM_3209___t   1003 CCGCATTCGGC--AAATCAGTTAAAAGAGGCCAT-TCACGCCTACCTTTA   1049

BSNT_05420___   1040 -------AGGGATATTTGGAAGTCGGCACTTG-GCAAG----AAGTCATT   1077
                            |||      |||||         || |||||    |||     
BPUM_3209___t   1050 TGAAAACAGG------TGGAA---------TGAGCAAGTAAAAAG-----   1079

BSNT_05420___   1078 GCTGAAGAACTGTATCAAACGGTGCTCGAT---GATTATGACGCCTTTC-   1123
                          .||.||..||||||..||.|   ||   ||.||        ||| 
BPUM_3209___t   1080 -----CGATCTACATCAAATCGTTC---ATACAGAATA--------TTCA   1113

BSNT_05420___   1124 ----AAAATGCCGGCAAGTTGCT-------GGATGTGTATAAGGATGTT-   1161
                         |||||...|..|||..|||       ..||.|| |.|||| ||.| 
BPUM_3209___t   1114 TCAGAAAATAATGCGAAGCAGCTCATACAGCAATATG-AAAAGG-TGCTT   1161

BSNT_05420___   1162 -----GTCAAGAACAA----TTAA   1176
                          .||||||.|.|    ||||
BPUM_3209___t   1162 CATCAATCAAGATCCATCGTTTAA   1185


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