Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05427 and BPUM_3214
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:03
# Commandline: needle
# -asequence dna-align/BSNT_05427___lytC.1.24716.seq
# -bsequence dna-align/BPUM_3214___lytC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05427___lytC-BPUM_3214___lytC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05427___lytC-BPUM_3214___lytC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05427___lytC
# 2: BPUM_3214___lytC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1648
# Identity: 950/1648 (57.6%)
# Similarity: 950/1648 (57.6%)
# Gaps: 344/1648 (20.9%)
# Score: 2334.0
#
#
#=======================================
BSNT_05427___ 1 ----------------ATGTTGT---------TGT--TAGGGTTCTTTTT 23
|.||.|| ||| |||...|.|.|.|
BPUM_3214___l 1 GTGCGCTCTATCATAAAAGTAGTATTTTTAAGTGTAATAGCTATGTGTCT 50
BSNT_05427___ 24 GTTTATGCCTAATGTATTTGCGGCCAACTCTGTCACAAGATTAGACGGTG 73
||||.|.||...||.|.||||.|.|||.||.|||||||||.|.||.||..
BPUM_3214___l 51 GTTTCTTCCATCTGCACTTGCTGACAATTCAGTCACAAGAATTGATGGGA 100
BSNT_05427___ 74 TAAATCGTTATGAGGTTGCGGTGAACGTTTCCAAGCAGGGATGGTCAAGT 123
.|||.|||||||..|||||||||||.|...|.||..|..|.|||.|||..
BPUM_3214___l 101 AAAACCGTTATGCTGTTGCGGTGAATGCGGCGAAAAAAAGTTGGACAACA 150
BSNT_05427___ 124 GCAAGCACTGTCATTGTTGCAAATGGAAAG--GCATATGCAGACGTCCTT 171
.||||.||.||..||.||| .|.|||||| ||||||||.|| |.|.|
BPUM_3214___l 151 TCAAGTACAGTTGTTCTTG--TAGGGAAAGATGCATATGCGGA--TGCAT 196
BSNT_05427___ 172 TCA--GCAACTCCATTTGCCTATCGAAACAACGCGCCTGTTCTATTAACT 219
|.| |||..|||.|||||.||||.|||.||.||.||||||||.||.||
BPUM_3214___l 197 TAAGTGCAGTTCCTTTTGCATATCAAAAAAATGCACCTGTTCTTTTTAC- 245
BSNT_05427___ 220 GAAGC-GT-CTAAATTACCAACGGCGACAAAAAACCGAATT---AGTCAG 264
||.| || |||..|||.|.||.|..||.|||||..|..|| ||||
BPUM_3214___l 246 -AAACAGTACTAGTTTATCTACAGATACGAAAAAAGGCCTTCAAAGTC-- 292
BSNT_05427___ 265 TTAAAACCTAGCAAAGTGATCGTAATC--GGCGGAACCGTCAGCGTTCAA 312
|||||.|.|..||.||||| ||.|| ||.||.|| |
BPUM_3214___l 293 -TAAAAACAAAGAATGTGAT--TATTCTTGGTGGCAC------------A 327
BSNT_05427___ 313 AACGGCGTC---GTAAACG---------AGATTAAAAAGCTTGGTGTGTC 350
||..|.||| |.|||.| ||.|||||..|.|.|| |..
BPUM_3214___l 328 AAAAGTGTCTCTGGAAAGGTAACAACTCAGCTTAAATCGATGGG---GAT 374
BSNT_05427___ 351 ATCTGTCGAACGCATCGGCGGAGCGAATCGCTACGAGGTTGCGGCGAATA 400
.|||||..||||.||..|.||...|||.|||||.||..|.||.||.||||
BPUM_3214___l 375 TTCTGTGAAACGTATTAGTGGTAAGAACCGCTATGACTTAGCAGCAAATA 424
BSNT_05427___ 401 TTGCAAATAAGTTGCCGAAAAATTCAAAA-----------GCTGTCATCG 439
|.|||| ||.||.|.|||| |||||..|.|
BPUM_3214___l 425 TCGCAA-----------AACAAATGAAAAGCTCTAGTACGGCTGTTGTAG 463
BSNT_05427___ 440 CAAACGGAACGGCGTATGCTGACAGCC-TAGCGATCGGCGCATATGCCGC 488
|.||.||....||.|||||.|| .||| |.||.||.|...|.|||||.||
BPUM_3214___l 464 CCAATGGCTTTGCTTATGCAGA-TGCCGTTGCCATTGCACCTTATGCTGC 512
BSNT_05427___ 489 AAGAAACGGCATTCCGATTCTT-TTAAC--ATCGTCAAA---TTCCATAC 532
||.|.|.|||..||| |.|||| ||||| || |..||| ||.|.|.|
BPUM_3214___l 513 AAAACAAGGCTATCC-AATCTTATTAACAAAT-GATAAAGGTTTACGTTC 560
BSNT_05427___ 533 CGA-----CAGCGACAAAAAATGCAATGAAGAGCAAAGGA---ACAACAT 574
.|| ||||| |..|||||.|||..|||| | ||.||
BPUM_3214___l 561 GGAAACTTCAGCG---------GTCATGAAAAGCCGAGGAGTTA-AAAAT 600
BSNT_05427___ 575 CGACCATCGTCGTAGGCGGTGAAGTCAGCATCTCCAGCAGCGTATACAAA 624
|||||.|||.|.||.|| |.|||| .||||||.|.|||
BPUM_3214___l 601 --ACCATTGTCATTGGTGG-GGAGTC-----------TAGCGTAAATAAA 636
BSNT_05427___ 625 -CAGCTT-----------GCTTCTCC--GACGCGGATCGGCGGCAGC-AA 659
|||||| .||||.|| || .|.||.||.|| ||| ||
BPUM_3214___l 637 TCAGCTTATGCTCAGTTGCCTTCACCTGGA--AGAATTGGTGG-AGCAAA 683
BSNT_05427___ 660 CCGCTATGAAGTCGCGGCAAATGTCGTCAAGAAATATTATTCTTCTGCGA 709
.||.|||||||||||.||||||.|.||.||||||||..|| |
BPUM_3214___l 684 TCGTTATGAAGTCGCAGCAAATATTGTGAAGAAATACAAT---------A 724
BSNT_05427___ 710 AGAAT----GCAAT-----TATCAGCAACGGCTATGCGTATGCCGATG-- 748
.||.| |||.| |||.||.||.||.|.|||.|||||.||||
BPUM_3214___l 725 TGAGTACGAGCACTACGTATATTAGTAATGGTTTTGCCTATGCGGATGCC 774
BSNT_05427___ 749 GATTAACAGGATCTGTTCTGGCGGCTAAGCA----AAACCGTCCGATGAT 794
|.|| |||||.||..|.|.||.|||||||| |||.|.| |.||
BPUM_3214___l 775 GCTT--CAGGAGCTAGTATCGCTGCTAAGCAAGGTAAAGCTT----TTAT 818
BSNT_05427___ 795 GTTCACGAATGCATCGTCTTTGCCGACACCGACAAGAGAAGTGATCGGTT 844
.|||||.||||.|....|.||.||.|.|.|.||.|||.||.|.||.||||
BPUM_3214___l 819 TTTCACAAATGAAAAAACATTACCAAAAGCAACTAGACAAATAATTGGTT 868
BSNT_05427___ 845 CCAAAAACATGACGACGTTTACCGTGCTTGGCGGAACGGTTTCTCTTCAA 894
|.||.||.||.||..|.||||...|.||.||.||.|| |
BPUM_3214___l 869 CGAAGAAGATCACTTCATTTAGTATTCTAGGTGGTAC------------A 906
BSNT_05427___ 895 TCC------------AATGTCGTGTCACAGCTGAAAAATCCGATCGTCGG 932
||| |.|||.||.||.||..|||||||.||..|||||||
BPUM_3214___l 907 TCCACTGTGACGAATACTGTGGTTTCCCAATTGAAAAACCCTGTCGTCGG 956
BSNT_05427___ 933 CAAAAAAATCTTCATTGATGCAGGGCACGGAGGTACA-GA--CAGCGGTG 979
.||||||.|.|||||.|||.||||.||.|| .|.||| || || ||.|
BPUM_3214___l 957 GAAAAAAGTATTCATCGATCCAGGTCATGG-TGCACATGATTCA--GGAG 1003
BSNT_05427___ 980 CTATCGGCAACAGTCTATATGAAAA-AAGTGTGAACCTTGATGTTGCAAA 1028
|..|.|||.||.|..|||||||||| ||.| ||||..|.|||||.||.||
BPUM_3214___l 1004 CAGTAGGCTACGGGTTATATGAAAAGAACT-TGAATTTAGATGTAGCGAA 1052
BSNT_05427___ 1029 A---TTAATTAATACGAAATTATCAAACGGCGGTGCTCTGCCAATAATGG 1075
| ||| ||||||||||||...||.|..|||||.||..|||..|||.
BPUM_3214___l 1053 ACGTTTA---AATACGAAATTAAACAATGCTGGTGCACTTACAACGATGT 1099
BSNT_05427___ 1076 CGAGGACGAACGACACTTACCTGACGCTTGCACAG----------CGCGT 1115
| |.||||..||..|||.| ||| |.|| ||.||
BPUM_3214___l 1100 C----AAGAACATCAGATACAT-----TTG-ATAGTCTCCAAACACGAGT 1139
BSNT_05427___ 1116 GTCAAAAGCACA--------GTCAAATAAAGCAGATTTGTTTGTCAGCAT 1157
| ||||.| |.||||| ||||||.|.||..||||..|
BPUM_3214___l 1140 G-----AGCAAAGGTGCGTCGGCAAAT---GCAGATATCTTCATCAGTGT 1181
BSNT_05427___ 1158 CCATGCAAACTC----GGCAACGCCTGCTGCTTCCGGAACAGAAACTTAC 1203
||||||.||||| |..|||..|.| |||...||||||||||||.||.
BPUM_3214___l 1182 CCATGCGAACTCAAATGATAACAGCAG-TGCAAACGGAACAGAAACGTAT 1230
BSNT_05427___ 1204 TATTATACGACGTATGAATCAGCCAATAG-TAAAAGGTTG-GCAACCGAG 1251
|||.|||..||.||||..||.||.||.|| |..|||.||| |||| .|.
BPUM_3214___l 1231 TATGATAAAACATATGCGTCTGCAAACAGCTTGAAGCTTGCGCAA--AAC 1278
BSNT_05427___ 1252 ATTC-----AAAATCGTCTCTATGTAGCGCTGAATACAACAAACCGTGGT 1296
|||| |||||.|||..| ||.||...|||||.|.||||||||
BPUM_3214___l 1279 ATTCAGCCGAAAATGGTCAGT-----GCACTTGGTACAAGAGACCGTGGT 1323
BSNT_05427___ 1297 GTGAAAATCGGCAAC----TTCCATGTCATCAGGGAATCCAAAATGCCAA 1342
||||||| ||.| |||.|.||.||.|...|.||.||||||||.|
BPUM_3214___l 1324 GTGAAAA----CAGCTGGATTCTACGTGATTAAATATTCTAAAATGCCGA 1369
BSNT_05427___ 1343 GCTG-CCTTGTTGAACTTGCGTT---TATCA-------------CCAATA 1375
| || .|||.|.|||..|| ||| |.||| |.||||
BPUM_3214___l 1370 G-TGTTCTTTTAGAAACTG-GTTTTGTGTCAAGTCCAGTCGATTCAAATA 1417
BSNT_05427___ 1376 TC---AACGATGCGGCTAAGCTCAAAAGCTCAATTTACAAAGAAAAAGGC 1422
|| || || |.||||.| |..||||.|| .|||| ||
BPUM_3214___l 1418 TCTTGAA--AT-CAGCTACG-TATAAAGATC-GTTTA-----------GC 1451
BSNT_05427___ 1423 GCTAAAGCGATTTACGACGGAATCGTT------GCTTACTAT---TAA 1461
| |.|.|| |||| .||.||.| |.|||||.| |||
BPUM_3214___l 1452 G-TCAGGC-ATTT------CAAGCGGTGTGTCAGGTTACTTTAGATAA 1491
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