Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02005 and BPUM_3229

See Amino acid alignment / Visit BSNT_02005 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_02005.1.24716.seq
#    -bsequence dna-align/BPUM_3229___tagE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02005-BPUM_3229___tagE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02005-BPUM_3229___tagE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02005
# 2: BPUM_3229___tagE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2219
# Identity:     754/2219 (34.0%)
# Similarity:   754/2219 (34.0%)
# Gaps:        1273/2219 (57.4%)
# Score: 1306.5
# 
#
#=======================================

BSNT_02005         0 --------------------------------------------------      0
                                                                       
BPUM_3229___t      1 TTGGACAACAATGAAAGGTTGAGTGTTTTGATCCAAACATGGTTTAACAA     50

BSNT_02005         0 --------------------------------------------------      0
                                                                       
BPUM_3229___t     51 GCTTAGAAAAAAGACACATGAAGATAATCAAAGTCAGCCGCAACAACAAT    100

BSNT_02005         0 --------------------------------------------------      0
                                                                       
BPUM_3229___t    101 TGCAAATTCCTGATATGGAGTATTACTTTATTACTGGAAGAATTAAAGAA    150

BSNT_02005         0 --------------------------------------------------      0
                                                                       
BPUM_3229___t    151 AAATATGGTGGTATGACGAAGTCGTTATTACTACGTGCGAACTTATTTGG    200

BSNT_02005         0 --------------------------------------------------      0
                                                                       
BPUM_3229___t    201 ATTAAAGAATATTTCAACCCATTTTTTAACCTTTTCATATGATCAAGAAT    250

BSNT_02005         0 --------------------------------------------------      0
                                                                       
BPUM_3229___t    251 TTTCTCAGAAAGTGAAAGGGATCTTTGACAAGCAAATAGTCGATCCTAAC    300

BSNT_02005         0 --------------------------------------------------      0
                                                                       
BPUM_3229___t    301 GTGACGAAAATCCAAAATATGTATGAAGATTTCCTTATTCCAAATTGTTC    350

BSNT_02005         0 --------------------------------------------------      0
                                                                       
BPUM_3229___t    351 ACCAAAGGAACAGTATCAGCCAACTTATCACGCTGGCAACAATAAAGGGT    400

BSNT_02005         1 ---------ATG-AGA--CTTAAGTTCAT-TGATTACCGTGACCTTAATC     37
                              ||| |||  |.|..||||.| ||||||    ||..|.||..
BPUM_3229___t    401 CATTTGATCATGAAGATCCATCGGTTCGTATGATTA----GAAATGAAAA    446

BSNT_02005        38 TTCAA--CGTACTCATAGAGTTGAATA---TGATCTTAATGGCAGAAA--     80
                     .||||  |..|.|.|.|.||||||.||   |.|||..|||  |||.||  
BPUM_3229___t    447 ATCAAATCAAATTGAGATAGTTGATTATTTTCATCCAAAT--CAGCAATT    494

BSNT_02005        81 -AAGACGTGAGATTATATATAATCTTCAGAACAACAAGCCC----GC---    122
                      .|||.|.||||..| |||||| ||.|       ||||..|    ||   
BPUM_3229___t    495 GGAGAAGCGAGAGGA-ATATAA-CTCC-------CAAGGGCAGTTGCATA    535

BSNT_02005       123 --GTTT--------------GAA------AAATACTAT---GA------C    141
                       ||||              |||      |||..||||   ||      |
BPUM_3229___t    536 AAGTTTCCTATTTCTCTCAGGAAACGGGCAAAGTCTATCGAGAACTATTC    585

BSNT_02005       142 ATTAATGGAA--ATTGTTATTTATCTGTTTGGGTAAA-------------    176
                     |||.|||.||  |.|..|||||||.||       |||             
BPUM_3229___t    586 ATTTATGAAAACACTCATATTTATATG-------AAAAAAGGATATGCTG    628

BSNT_02005       177 CTCTTCAGG--GAAACGAACAAAGT--------------------GTGTT    204
                     .||||.|.|  |||.|.|  |||||                    ||.||
BPUM_3229___t    629 ATCTTAAAGAAGAAGCTA--AAAGTAAATTGAGAGACATCATTTGGTATT    676

BSNT_02005       205 C--------------------TTCATGCTG-----GAATTA--ACAA---    224
                     |                    ||.|...||     ||||||  ||||   
BPUM_3229___t    677 CCGAAGAAGGGATAAAAACCTTTAAAAATGAAAAAGAATTAAGACAAGAG    726

BSNT_02005       225 -GGC--------ATTCAATCATATAACTGAT--GCACACG-TCTATTGGG    262
                      |||        |||||.| |||.||.||||  |.|.|.| |||.||..|
BPUM_3229___t    727 TGGCTTACAACTATTCAGT-ATAAAAATGATCGGAAAAAGCTCTTTTTAG    775

BSNT_02005       263 TTGA----------------------GTCTATCC--------TAAAGGAT    282
                     ||||                      ||.| |||        .||||||.
BPUM_3229___t    776 TTGATAGCCGGAAGCAGGATAAGTATGTGT-TCCAATTGAAAAAAAGGAG    824

BSNT_02005       283 T--------------------------------ACAC-------------    287
                     |                                ||||             
BPUM_3229___t    825 TTCATCTTATTTCTCAGCAATCATTCACAGTAAACACTATGAAAGAGAAA    874

BSNT_02005       288 -----GAA------TCCGTTTTTAATGCTGGATGAATTAGGTTT------    320
                          |||      ||.|.||.||       ||||||||  |||      
BPUM_3229___t    875 AGACGGAATTACGTTCTGATTATA-------ATGAATTA--TTTACTCAA    915

BSNT_02005       321 --------------ATTAGATG-------TTTT----CCGCAAG------    339
                                   |.||||||       ||||    |.| |||      
BPUM_3229___t    916 GTAAGAAAACAAAAAGTAGATGCCGTCTTTTTTATCACTG-AAGAGCAAA    964

BSNT_02005       340 --------GTAG-GAAACGATT--GTCA-CAAAA--------TTGTAACA    369
                             |||| |||||.|||  |||| |||||        ||.|||||
BPUM_3229___t    965 AAACAGACGTAGTGAAACAATTTGGTCATCAAAATATATTCTTTTTAACA   1014

BSNT_02005       370 CTACATAATACACATCTTGATAAACCGCACGT---------TAAAGGGTC    410
                     |.||||     ||||     ||.|.||..|||         ||.|.|.||
BPUM_3229___t   1015 CCACAT-----ACAT-----TAGATCGTTCGTCGCATCAAGTACAAGATC   1054

BSNT_02005       411 TCCATA---CAGACGCG-----TGTACAAA-------GAGATATTTGACC    445
                     .|.|||   |.||..||     .||||..|       ||||   ||||||
BPUM_3229___t   1055 ACTATACTGCTGATCCGAATAAGGTACTGATGATGGCGAGA---TTGACC   1101

BSNT_02005       446 ACAAAGACGAAT----TCGATG-----CGATTGTTT--------------    472
                     |.||..|..|||    |.||||     ||.|.||||              
BPUM_3229___t   1102 AAAATAAAAAATGTCATAGATGCCATACGTTCGTTTGAATTTGTGATAAA   1151

BSNT_02005       473 --------------------------TCTT---------AACT---GAAG    484
                                               ||||         |.||   |||.
BPUM_3229___t   1152 GGAAGTACCGAATGCAAGGCTTGAAATCTTTGGTTCAGGACCTCAAGAAA   1201

BSNT_02005       485 AGCA---AAAAAGAGATGTTGAGGAAGATTA------CGGAACGGATG--    523
                     ||||   ||||..|||..||.|  |||||||      .|||| ..|||  
BPUM_3229___t   1202 AGCAACTAAAACAAGAAATTAA--AAGATTAGACTTGGGGAA-TAATGTC   1248

BSNT_02005       524 --------AGCGATTTGTTGTAATTCCTCATGCTGTTACTCTAGATAAAG    565
                             || ||||...|..||.||||.||||||  |.|.|||| |.||
BPUM_3229___t   1249 TTCTTGAAAG-GATTCACTCAAAATCCTGATGCTG--AATTTAGA-ACAG   1294

BSNT_02005       566 GCGCGATATTAGA-----------TAAGTCTA---TTGAACGAAACCC--    599
                             .||||           ||..||||   |||||.|...|||  
BPUM_3229___t   1295 --------CTAGAATGTCCCTTTCTACCTCTATTTTTGAAGGCTGCCCAT   1336

BSNT_02005       600 --------------TAAATCGGCCATAACA--------------------    615
                                   |.|||||   .|||||                    
BPUM_3229___t   1337 TGTCAATCATGGAATCAATCG---TTAACAATTGCCCTGTGATTACCTAT   1383

BSNT_02005       616 ----------------CTAGCTCGCTTG-GA--------------GGA--    632
                                     |||||.|||||| ||              |||  
BPUM_3229___t   1384 AATTACGATTATGGTGCTAGCACGCTTGTGAAAAATCAGTTTAATGGATT   1433

BSNT_02005       633 ----------CAGT--------AAAAATATTGCGGACGGAATTCGTGCTT    664
                               ||||        |||.|..|.||..||..|||     |.|
BPUM_3229___t   1434 TGTTGTTGAGCAGTATGAAGTGAAACAGTTAGCTAACAAAAT-----CAT   1478

BSNT_02005       665 TCCGTATTGTGGTCGACGAAATTAAAGACGCCGAGTATCATATCTTTGGT    714
                     |  |.|||||      .||||  ||.||.|...|||||||.||.|||  |
BPUM_3229___t   1479 T--GAATTGT------TGAAA--AATGATGAACAGTATCAGATTTTT--T   1516

BSNT_02005       715 TATGGAAAA-------GAGA------AGGAAAATTTACAAGCGTTGATAA    751
                     .|  |||||       ||||      |||.|.|||  |||   ||...||
BPUM_3229___t   1517 CA--GAAAATTGTCAGGAGACTGCAGAGGTATATT--CAA---TTCCCAA   1559

BSNT_02005       752 AGGATCTGCATTTAGAAA-----ATAACG----TTCATATACATGGGTTT    792
                          ||  |||..||||     |.||||    |||||| |.|||     
BPUM_3229___t   1560 -----CT--ATTATGAAAACTGGACAACGGCACTTCATA-AAATG-----   1596

BSNT_02005       793 ACTCATA-ACGT------TAATAGAG---AAATTCAAAAACACGGGCTGT    832
                         ||| |.||      .||.||||   |||||||||||          
BPUM_3229___t   1597 ----ATAGAAGTGCGAGAAAAAAGAGACCAAATTCAAAAA----------   1632

BSNT_02005       833 CTATTATGACATCTCGATTCGAAGGATTCTGCTTAGTAATTA-TGGAAA-    880
                       ||.||||..|||  ||||     |||    |||  ||||| |||.|| 
BPUM_3229___t   1633 --ATGATGAAGTCT--ATTC-----ATT----TTA--AATTAGTGGGAAT   1667

BSNT_02005       881 ----GTCTAGCCAATCAAACGC---CCGTAGTGAGTTACAGAACGAAGTA    923
                         ||..|.|  ||||.|..|   ||.|  .||.||.||.|..|||   
BPUM_3229___t   1668 TGATGTTGAAC--ATCATATTCTTTCCTT--GGATTTGCACATAGAA---   1710

BSNT_02005       924 CGGTCC---GGAAACACTCATTAGAGATGGGAAAGATGGGTACTTAGTAG    970
                      |||.|   .||||.||             ||||.|.||.||  ||.|||
BPUM_3229___t   1711 -GGTGCTATTGAAAAAC-------------GAAAAAAGGTTA--TATTAG   1744

BSNT_02005       971 AA---------TAT------AATAACTATG--------------------    985
                     ||         |||      .|||||.|||                    
BPUM_3229___t   1745 AACTTGTCGGTTATGATCGGCATAACCATGCCGAGTTATTCTCTAAAAAA   1794

BSNT_02005       986 ------------AAG-------------------------------AAGC    992
                                 |||                               ||||
BPUM_3229___t   1795 ATCGAAAATTTAAAGGTCTCCTTTCCAATTGGACATGCATCCATACAAGC   1844

BSNT_02005       993 TGCA--GAAA---AAGTGATCGAATT-------------------AATGA   1018
                     ||||  ||||   ||...|.||||.|                   |||||
BPUM_3229___t   1845 TGCATTGAAACGGAACAAAACGAAATATGTTGATTTCTATATTAGAATGA   1894

BSNT_02005      1019 AAGACAGTAAGCTGCAGA--------AAAA--------GTTTGCCA----   1048
                     .||||        |||||        ||||        ||||.|||    
BPUM_3229___t   1895 GAGAC--------GCAGAATACAATGAAAACATTAAGCGTTTACCAATTG   1936

BSNT_02005      1049 ------------------AAAATTCGTTAGATGTATACAAACGATTTA--   1078
                                       ||||      |||||||| ||||.| ||.|  
BPUM_3229___t   1937 CCGAGCATCTGCTCAATGAAAA------AGATGTAT-CAAAAG-TTGACG   1978

BSNT_02005      1079 GTTATGCTCGCTATAAGAAGAACT---GGCTCGACTTATTTAAACAGCTT   1125
                     ||..|.||   |||||| |.||.|   ||   ||.|||||       |||
BPUM_3229___t   1979 GTGTTTCT---TATAAG-ACAATTAAAGG---GAATTATT-------CTT   2014

BSNT_02005      1126 TCG----------AAATAA   1134
                       |          ||||||
BPUM_3229___t   2015 --GGAAGGTGAATAAATAA   2031


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