Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05455 and BPUM_3232
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:04
# Commandline: needle
# -asequence dna-align/BSNT_05455___tagB.1.24716.seq
# -bsequence dna-align/BPUM_3232___tagB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05455___tagB-BPUM_3232___tagB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05455___tagB-BPUM_3232___tagB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05455___tagB
# 2: BPUM_3232___tagB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1342
# Identity: 766/1342 (57.1%)
# Similarity: 766/1342 (57.1%)
# Gaps: 332/1342 (24.7%)
# Score: 1872.5
#
#
#=======================================
BSNT_05455___ 1 ATG---AATATACGTTCTTTATTGGTTATGATTTACTCGGCCGGTCT--- 44
||| |.||||||.|| |.|| ||.|||| |.|.||
BPUM_3232___t 1 ATGAGAACTATACGCTC---AATG---ATCATTT-------CAGGCTATG 37
BSNT_05455___ 45 -CGCTTTGACCGGTTTTATTTTCA---GAAGG------------GTAAAA 78
.||||| || ||..||||| ||.|| ||.|||
BPUM_3232___t 38 CAGCTTT---CG---TTTCTTTCATTGGATGGCTGATGAGCGGCGTGAAA 81
BSNT_05455___ 79 GCTCGCGATA-------GA-GCTGTATTGCTTGCTTCCTTTCCGGATAAT 120
.|.||.||.| || || ||||||.|||.||||..||.|||
BPUM_3232___t 82 CCACGGGAAAACCAGGTGACGC-----TGCTTGTTTCATTTCAAGAGAAT 126
BSNT_05455___ 121 GCGCGCGAGCTGC-----TTGATGAGTATGTCAGCAGCAACTGGCCGTTT 165
|| |||||| |||||...||| ||.||||.|||
BPUM_3232___t 127 GC-----AGCTGCTCTTATTGATACTTAT-----CAACAACAGGC----- 161
BSNT_05455___ 166 GAA-ATG-----GAA-------GTCCTTTTAACAAGGCACGCCGTTTCCC 202
||| ||| ||| |||||.|..||.|.|||.|| |||
BPUM_3232___t 162 GAACATGACGATGAAGCTCACTGTCCTCTACACGAAGCATGC---TTC-- 206
BSNT_05455___ 203 TTGCAGAT-GAATA-------TC-CTTCTG----TTCGATCGCAAATAAT 239
||| ||| |||.| || |.|||| ||||.| ||..|
BPUM_3232___t 207 -TGC-GATAGAAAAGGACACGTCTCATCTGTCATTTCGCT-----ATTTT 249
BSNT_05455___ 240 CAACGAGAAAAATCCGATTCATCTCATTAAAGCCG----TATACCTGATG 285
| |.||.||||||||..|.|||||||||.|| .| ||||| .|||
BPUM_3232___t 250 C-ATGAAAAAAATCCTCTCCATCTCATTCAA--TGTATTTATAC--AATG 294
BSNT_05455___ 286 TTTAGGTGTAAATTTGTGTTAACGGATAATTATTTTCTGCTGACAAGTGT 335
||||...|.||..||||..|.||.||||||||.|||||..||||||||||
BPUM_3232___t 295 TTTAAAAGCAAGGTTGTCGTGACAGATAATTACTTTCTCATGACAAGTGT 344
BSNT_05455___ 336 TTTGAATAAACGTCCTCAGACGACATGCATTCAAATTTGGCATGCGTCCG 385
..|.|..|||||||||...||.||.||.||||||.|.||||||||....|
BPUM_3232___t 345 ACTCAGAAAACGTCCTTCTACCACTTGTATTCAAGTATGGCATGCCAATG 394
BSNT_05455___ 386 GCGCTTTGAAGAAGTTTGGACTCGAGGAT--ATCGGAAA--CCGCTATCG 431
|.||.|||||.||.|||||.||.||.||| ||| ||| |.| |.||
BPUM_3232___t 395 GGGCGTTGAAAAAATTTGGTCTTGAAGATGCATC--AAATTCAG--AACG 440
BSNT_05455___ 432 A--TCCACCGGGGATATCAAACGGTTTAAAAAGGTGTAT-CGTTCGTTTG 478
| |||.| |.||.||||||||.||.|||...||.||| || ||.||.|
BPUM_3232___t 441 AAGTCCTC--GTGACATCAAACGATTCAAACGAGTCTATGCG-TCTTTCG 487
BSNT_05455___ 479 ATCATATCGTTGTCGGCTCTGAAAAAATGGTGGACATTTTCAAGCGGTCA 528
||.||||.|||...|||||.||..|.|||...||.|||||.|||...||.
BPUM_3232___t 488 ATTATATTGTTACAGGCTCAGATCATATGCGCGAGATTTTTAAGTCTTCG 537
BSNT_05455___ 529 TTCGGAGTGAAAGATGACCGTTTTTTGCGGACGGGTGTTCCGTTAACTGA 578
||.||.||.||.|||||.||||||||.|..||.|||||.|||.|.||.||
BPUM_3232___t 538 TTTGGGGTAAATGATGAACGTTTTTTACCAACTGGTGTACCGATGACGGA 587
BSNT_05455___ 579 TGAATACTTTCATGTCAAAAGAAAAACAGC------------TGA--CCG 614
|...||||.|.|| |||| ||| |||
BPUM_3232___t 588 TTTGTACTATGAT-------------CAGCGCCGACATTCATTGAAGCCG 624
BSNT_05455___ 615 --------TCCGAA---CCAAAAGCTTATTCTGTATGCGCCGACATACAG 653
|||.|| ..|||||.|..|.||.|||||||||||.||..|
BPUM_3232___t 625 AATGATTTTCCTAAAGGGAAAAAGATCCTGCTTTATGCGCCGACCTATCG 674
BSNT_05455___ 654 GGACTATTG--TTTGAC-GTCCATTCGT-CTCCCTTTCTCTAAGGAGCAG 699
.|||| ||| .|.||| ||| |.|| ||.|||||.||.|||| ||
BPUM_3232___t 675 AGACT-TTGCAATGGACGGTC---TTGTCCTGCCTTTTTCAAAGG---AG 717
BSNT_05455___ 700 CTCT-----CCAGAGAACTGAAGGGAGAATTTTTGCTACTGGTCAAACTA 744
||.| .||||| ||.||.||.||.|.|.|.||.||.|||||.|||
BPUM_3232___t 718 CTATTGCAAACAGAG--CTAAACGGCGATTATATTCTGCTCGTCAAGCTA 765
BSNT_05455___ 745 CATCCAGCCGT----------------GCGGAAACAGATTACTTTTGAAG 778
|||||..|.|| ||||||||||
BPUM_3232___t 766 CATCCTACGGTCAAGCATTTAGCGAACGCGGAAACAG------------- 802
BSNT_05455___ 779 AACAC---GAAGGG----TTGATCAAAGACGTATCAGACGTTCCG--TTA 819
|| |||.|| ||||| |||||.||....||| |||
BPUM_3232___t 803 ---ACGGTGAATGGATATTTGAT-------GTATCCGATCAGCCGCTTTA 842
BSNT_05455___ 820 AAGAATTTGCT----------GATGGAAAGTGACATCCTGATTTCCGACT 859
...| ||||| |||| |..||||..|.||.|
BPUM_3232___t 843 TCCA--TTGCTTCGTGTGTGCGATG----------TGTTGATCACAGATT 880
BSNT_05455___ 860 ACTCGTCAGTCGCCTTTGAGTACGCTTTG-TTAAATAAACCGATTTTGTT 908
||||.||..|.|..|||||.||.||..|| ||.|| ||.||..||||.||
BPUM_3232___t 881 ACTCATCGATTGTGTTTGAATATGCGCTGCTTGAA-AAGCCCGTTTTATT 929
BSNT_05455___ 909 TTTCACGTATGA----------TATGGCAGAGTATAATGAAAAACGCGGA 948
.|||||.||||| |||.| |||| ||.|||||.
BPUM_3232___t 930 CTTCACCTATGACTTAGACACTTATCG-AGAG---------AAGCGCGGT 969
BSNT_05455___ 949 CTGATCGATGATTTTGAAG-CAGTCATCCCCGGCAGAGCCTGCATG-GAC 996
.|..|||||...|.|||.| || ||||.||.||.| || ||.|| |.|
BPUM_3232___t 970 TTAGTCGATCGGTATGAGGACA-TCATTCCTGGGA-AG---GCTTGTGTC 1014
BSNT_05455___ 997 ACCGAA---ATGCTGTTGAAAGAAATC---------AAAGAAATGTCCGA 1034
||..|| |||||.|||||.||..|| |||||| ||.||
BPUM_3232___t 1015 ACTCAAAACATGCTTTTGAAGGAGCTCCTTCATCTAAAAGAA---TCAGA 1061
BSNT_05455___ 1035 T--ACAAAGGAAAACTTCAAGAGGTTTGCGAAAGAGTGGCATCAATATTC 1082
| .|||||..||| ||||.|..|||||..|.||.|||.||||||||||
BPUM_3232___t 1062 TCACCAAAGACAAA--TCAAAACCTTTGCCGAGGAATGGAATCAATATTC 1109
BSNT_05455___ 1083 AACAGGTGATG--CCAGCATGCGC--CTGTTGAACTTTA-TGAGCGAGCA 1127
|.||| ||.| |||| ||.|| ||.||...||||| |||.| ||||
BPUM_3232___t 1110 -AGAGG-GAAGGTCCAG--TGAGCAGCTCTTATCCTTTATTGAAC-AGCA 1154
BSNT_05455___ 1128 --TATGACAGAAAATGAAAAAAGACCGGCCGGTTCCTAA--- 1164
|.|.|||.| |||||.|.||||| |||..||
BPUM_3232___t 1155 GCTCTTACACA-----AAAAACGTCCGGC---TTCTCAATAG 1188
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