Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05460 and BPUM_3249

See Amino acid alignment / Visit BSNT_05460 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_05460___gerBB.1.24716.seq
#    -bsequence dna-align/BPUM_3249___gerBB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05460___gerBB-BPUM_3249___gerBB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05460___gerBB-BPUM_3249___gerBB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05460___gerBB
# 2: BPUM_3249___gerBB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1236
# Identity:     708/1236 (57.3%)
# Similarity:   708/1236 (57.3%)
# Gaps:         264/1236 (21.4%)
# Score: 1700.5
# 
#
#=======================================

BSNT_05460___      1 ATGAGGCAAT---CAGAG--GACAAGCTTACATTTATGC-AGACGCTTAT     44
                             ||   |||||  ||.|||||..||||..|.| ||.|.| .||
BPUM_3249___g      1 --------ATGTACAGAGCTGAGAAGCTATCATTGTTACAAGTCAC-CAT     41

BSNT_05460___     45 TATGGTAAGCAGTACAATGATCGGTGCTGGCGTCTTAACCCTTTCCCGC-     93
                     |.||...|||..|||||||||.||.|||||..|.||||||.||.|.||| 
BPUM_3249___g     42 TCTGTGCAGCTCTACAATGATAGGCGCTGGAATTTTAACCATTCCACGCA     91

BSNT_05460___     94 --TCAGCCGCTGAAACCGACAGTCC--GATTGGATGGATCATGATCCTGC    139
                       ||.|||    ||..|...|.|||  || |||.||||||||..|..|..
BPUM_3249___g     92 GTTCTGCC----AATTCAGGATTCCCTGA-TGGCTGGATCATTGTATTAA    136

BSNT_05460___    140 TGCAGGGCGTTATTTTTATTATTTTTTCTCTGCTTTTT------------    177
                     |.|||||.||.||.||     ...||||..||||||||            
BPUM_3249___g    137 TACAGGGAGTCATCTT-----CGCTTTCGTTGCTTTTTTGTTGGGATGGA    181

BSNT_05460___    178 TTGCCTTTTCTTCAACGAAACA---GCGGGAAAACGATTTTTGAGCTCAA    224
                     ||||       |.||  |||.|   ||.|| |.||.||||||||| ||||
BPUM_3249___g    182 TTGC-------TGAA--AAAAATGCGCCGG-ATACCATTTTTGAG-TCAA    220

BSNT_05460___    225 CAGCATTGCAGCGGGAAAAGTGGTTGGT---TTCTTT---------TTGA    262
                         ||       .||||||..|..|||   .|||||         ||.|
BPUM_3249___g    221 ----AT-------AGAAAAGGAGCCGGTGCCATCTTTGGCACGTTCTTCA    259

BSNT_05460___    263 AT---GTATTTATT-TCCCTGTATTTTATCGGTATCGTATGTTTTCAGAC    308
                     ||   .||.|.||| ||    |||||..|.||.|||||..|.||..|..|
BPUM_3249___g    260 ATTTAATACTGATTGTC----TATTTACTAGGCATCGTCGGCTTCGAAGC    305

BSNT_05460___    309 ACGGATTTTAGGCGAGGTTGTCGGATTCTTTCTTTTAAAAAACACACCGA    358
                     .||..||.|.||.||.||.|||..|||.||.||..|..||...||.||.|
BPUM_3249___g    306 GCGTGTTCTCGGAGAAGTCGTCCAATTTTTCCTGCTGGAATCGACTCCCA    355

BSNT_05460___    359 TGGCGGTTGTTGTGATCATTTTTCTGGCAGTTGCCATTTATCATGTGGCT    408
                     ||||.||..|||||||.||||||||....||.||.||.||||||.||...
BPUM_3249___g    356 TGGCAGTGATTGTGATGATTTTTCTTCTCGTGGCGATCTATCATTTGAAA    405

BSNT_05460___    409 GGGGGCGTATACCCCATTG-CAAA--GGT-ATATGCATATATCTTCCCTA    454
                     .|.||..|.|..||.||.| ||||  ||| |.||.|||||||    ||.|
BPUM_3249___g    406 AGTGGTATTTTTCCAATAGTCAAAATGGTGACATACATATAT----CCGA    451

BSNT_05460___    455 TTACAATTATTATTTTT------CTCATGCTTTTGATGTTTAGCTTTCGT    498
                     |.||.||.|||||||.|      |||||||      ||||||      ||
BPUM_3249___g    452 TGACGATGATTATTTATATTGGGCTCATGC------TGTTTA------GT    489

BSNT_05460___    499 TTG------TTTCAGTTAGATTTTATACGGCCCGTTTTTGAAGG----CG    538
                     |||      ||..|.||.||||.|.|.||.||    |.|||.||    ||
BPUM_3249___g    490 TTGAAAATATTCGATTTTGATTATTTGCGTCC----TGTGATGGCGCACG    535

BSNT_05460___    539 GCTTTCAAAGTTT-------TTTTTCTTTATTTCCTAAAACCCTTTTAT-    580
                     |.||||....|||       ||.||||       ||.|||||  ||||| 
BPUM_3249___g    536 GGTTTCGGGATTTTAGCAAGTTGTTCT-------CTCAAACC--TTTATT    576

BSNT_05460___    581 -ATTTTTCTGGATTTGAAATTATTTTTTATCTCGTTCC----CTTTATGA    625
                      |.|||.||||.|||||..|.|||||.|.|.|.||.||    .||||| |
BPUM_3249___g    577 CAATTTACTGGCTTTGAGGTCATTTTGTTTGTTGTACCACTTATTTAT-A    625

BSNT_05460___    626 AAGATCCAAAGCAGGTAAAAA----------AAGCTG---TCGCCTTTGG    662
                     ||||  ||||  .|||.||||          .|||||   |||...||||
BPUM_3249___g    626 AAGA--CAAA--TGGTCAAAAGCGAAATGGGCAGCTGCGATCGGGGTTGG    671

BSNT_05460___    663 TATTGTAACCTCAACTGTTTTCTACAGCATTACTTTGTTTATTGTCATTG    712
                     .|||   ||.|   ||.||.||||...|.|.||..|.|||.||||.||||
BPUM_3249___g    672 GATT---ACTT---CTCTTATCTATTCCCTCACGCTCTTTGTTGTGATTG    715

BSNT_05460___    713 GCTGTATGAGTGTGGCTGAGGCAAAAACAGTGACGTGGCCGACGATTTCA    762
                     |.|..||||..||.|.|||..|.|||.|..|.||.||||||||..|.||.
BPUM_3249___g    716 GTTCCATGACAGTAGGTGAAACGAAATCCCTCACCTGGCCGACTGTATCC    765

BSNT_05460___    763 CTCATTCATGCATTAGAAATCCCGGGCATTTTTATTGAACGGTTTGACCT    812
                     ||||||||.|||.|||||.|....||..|.||.||||||||.|||||..|
BPUM_3249___g    766 CTCATTCAAGCACTAGAACTTGAAGGGGTCTTCATTGAACGATTTGATAT    815

BSNT_05460___    813 GTTTTTACAGTTAACTTGGAC-AGCACAGCA----ATTTGCATGTATGCT    857
                     .|||||.|.|...|.|||||| .|| ||.||    ||||||    |||||
BPUM_3249___g    816 ATTTTTGCTGACGATTTGGACGTGC-CAACAGTTTATTTGC----ATGCT    860

BSNT_05460___    858 CGGCT------------CCTTTAAAGG-GGCGCATATCGGATTAACAGAT    894
                     .||||            ||.||||||| .|| |||         ||||  
BPUM_3249___g    861 AGGCTTTTTCCAATTTGCCATTAAAGGTTGC-CAT---------ACAG--    898

BSNT_05460___    895 ATCTT-----CCACCTGAAAAATAAAAACAATCCT-TGGCTGCTTACTGC    938
                      ||||     |.|||   ||..|||..|.|.|.|| ||||||    |||.
BPUM_3249___g    899 -TCTTTAAGACGACC---AATGTAACGAGACTGCTATGGCTG----CTGT    940

BSNT_05460___    939 ATTGCTGGCTG-TTACATTTTTTCTATCAATGTTTCCTGA-AGATCTTAA    986
                     .||      || ||||.|.|...||.||..|.||||| || |.||.|.||
BPUM_3249___g    941 TTT------TGATTACCTCTGCCCTCTCTTTATTTCC-GAGAAATATCAA    983

BSNT_05460___    987 TGCCGTGTTTTATTACGGTACACTTCTCGGATATATAT---------TTC   1027
                     ||..||.|||||.|||..|||..|.|||||.|||..||         ||.
BPUM_3249___g    984 TGAAGTCTTTTACTACTCTACTTTACTCGGCTATGCATTGTTCGTCGTTT   1033

BSNT_05460___   1028 TAGGC-ATCATTGTAATA---CCATTTTTCATCTGGTTTTTAAGCTG--G   1071
                     |||.| .||.||.||.||   |||||.|               ||||  |
BPUM_3249___g   1034 TAGCCGTTCCTTTTATTACAGCCATTCT---------------GCTGATG   1068

BSNT_05460___   1072 ATACAGAAAAAACTGGGGAGGGGGCAGCTGCAATGA   1107
                     |||| |.|||||.||||||||..| |.|||| ||||
BPUM_3249___g   1069 ATAC-GCAAAAAATGGGGAGGTCG-ATCTGC-ATGA   1101


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