Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05461 and BPUM_3250

See Amino acid alignment / Visit BSNT_05461 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_05461___gerBC.1.24716.seq
#    -bsequence dna-align/BPUM_3250___gerBC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05461___gerBC-BPUM_3250___gerBC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05461___gerBC-BPUM_3250___gerBC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05461___gerBC
# 2: BPUM_3250___gerBC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1328
# Identity:     702/1328 (52.9%)
# Similarity:   702/1328 (52.9%)
# Gaps:         385/1328 (29.0%)
# Score: 1710.0
# 
#
#=======================================

BSNT_05461___      1 -----ATGAAGAC----AATGCTGAAACTTTTTGTAATGGTTCTGATGCT     41
                          |.||||||    |.||.|.|   |||||       ||.|..||||
BPUM_3250___g      1 ATGAGAGGAAGACGTGTATTGTTCA---TTTTT-------TTGTCTTGCT     40

BSNT_05461___     42 GCAGATGCTCTGC------------GGATGCTGGGATGTAAAAAATATTG     79
                     |     .||||.|            |||||||||||..|||||.||||||
BPUM_3250___g     41 G-----TCTCTTCCTTCTATCAGCAGGATGCTGGGACTTAAAAGATATTG     85

BSNT_05461___     80 AAAAATTGTCTTTCGCGAGAGGACTTGCGCTCGATGAAACGGATGACC--    127
                     |||||||.||.||.|.|.|.||..|||...|.|||||   |||.||.|  
BPUM_3250___g     86 AAAAATTATCATTTGTGCGCGGCGTTGGAATAGATGA---GGAGGAACAG    132

BSNT_05461___    128 --ACCAGTATAAATTAACATACCAAAACCTTCTTCCCCAAAGTGAAGACA    175
                       |..||| |||..|.||.|||||||||||..|.||       |||||..
BPUM_3250___g    133 AAAGGAGT-TAAGCTCACTTACCAAAACCTGGTGCC-------GAAGATG    174

BSNT_05461___    176 GCCAAGCATCCGGAAAAC------CCGAATT----------TGTTAATGT    209
                     |        .|||||.||      ||| |||          |||.||.||
BPUM_3250___g    175 G--------GCGGAACACAAGAGGCCG-ATTCTCCTGGCTATGTAAACGT    215

BSNT_05461___    210 GACATCCC--ATGGGAAAACCATTCTAGAAGCAGTCAGTGATGTATCCAT    257
                       |.||.|  |.|||||||.|.|.||.||.||.||||||.||||..||.|
BPUM_3250___g    216 --CGTCTCGAAGGGGAAAAACGTGCTGGAGGCTGTCAGTAATGTCGCCTT    263

BSNT_05461___    258 CAAGGACCCTCCTATTTATAGCGATCATTTAAAAGTCATTCTTCTTGGAG    307
                     .||||||||.||.||.|||||.||||||.|||||.||.||||..|.|  |
BPUM_3250___g    264 AAAGGACCCGCCAATCTATAGTGATCATCTAAAAATCTTTCTGTTCG--G    311

BSNT_05461___    308 AAAAGCTAATGAGGAATCAA----AACATAGATCAGG----TC-------    342
                     .||||          |||||    |||    ||||.|    ||       
BPUM_3250___g    312 CAAAG----------ATCAAGCAGAAC----ATCACGATATTCAAGGAAC    347

BSNT_05461___    343 -TTCAATCATTTTATCCGGGATGATGAGCTGCGGCGCAGCAGCTAT----    387
                      .|||||||||||||.||.||||||||..|.|||||.|||||||||    
BPUM_3250___g    348 GCTCAATCATTTTATTCGAGATGATGAAGTTCGGCGAAGCAGCTATCTCC    397

BSNT_05461___    388 ------------TTGATGGCAGCAAGAGGGAAAGCCGGAGATATT--TTC    423
                                 .|||| |||.|||.||             ||.|  .||
BPUM_3250___g    398 TCGTGTCACGTGGTGAT-GCATCAAAAG-------------TAATCAATC    433

BSNT_05461___    424 ACAAAAGGAAGTCCGAAGCAGCAGCTGCCGATGCCTTCCGAAAAG---CT    470
                     |.|||..|||.||       .||||               |||||   |.
BPUM_3250___g    434 AAAAATTGAAATC-------ACAGC---------------AAAAGGTTCC    461

BSNT_05461___    471 AATTGA-------TCTGA-----CCAATAACAGCGGGTATAACGGGAAGA    508
                     |.||||       |.|||     ||||.|||.|....|.||||||.||||
BPUM_3250___g    462 AGTTGAACATATCTTTGAAACATCCAAAAACCGAAACTTTAACGGAAAGA    511

BSNT_05461___    509 TTATGATGCCGCTTCGTATCGGCAGAGCTTCT-ATCTATTGCCAAAATGG    557
                     |..|..||||....|||||.|||.|.||.||| || ||.|.|||.|..||
BPUM_3250___g    512 TCTTACTGCCAACACGTATTGGCCGGGCATCTGAT-TACTTCCAGATGGG    560

BSNT_05461___    558 CTACAGTTTTCTTATTCAAGCCGTGAAAAACCAAAAGGGAAAAGCCAAGT    607
                     |...||.||.|||.|               |||||..|.|.|.||.|  |
BPUM_3250___g    561 CGTGAGCTTCCTTGT---------------CCAAAGTGTAGACGCGA--T    593

BSNT_05461___    608 ATGACG--GAGCAGGCATTATCAA--AAGGGGCAGCAAT-----------    642
                     | ||||  ||||     |||||.|  |.|||||||.|||           
BPUM_3250___g    594 A-GACGGCGAGC-----TTATCTATGATGGGGCAGGAATCATTCACGGTA    637

BSNT_05461___    643 --------AAACTCGTTGGGTTTCTTTCAGCT------GATG--------    670
                             ||.|| |.|.||.|||.|.|  ||      ||||        
BPUM_3250___g    638 AAAACCGAAAGCT-GATCGGATTCATCC--CTGCAAAGGATGTCCAATCT    684

BSNT_05461___    671 --AAACCCAGACACTGACATGGGTCATGGGGAC--AATCCAAGGCGGTGT    716
                       ||||             |||||.||  ||||  ||||..||||||.||
BPUM_3250___g    685 TTAAAC-------------TGGGTGAT--GGACCGAATCTCAGGCGGCGT    719

BSNT_05461___    717 CATGCCAACGACAGATAAAGGTCATCCGATTACGTTTGAAATCAAAAAAT    766
                     ..|.|||.|.||..|.|||||...||||||.||.|.||||||.||.|||.
BPUM_3250___g    720 TGTACCAGCTACTTACAAAGGCTTTCCGATCACATATGAAATTAAGAAAG    769

BSNT_05461___    767 CGAAAACGAAAATTAAGCCCGTCATTGACAACGGAAA-----GCCTGT--    809
                     |.|||||.||.|||.|.||     ||   |.|.||||     ||.|.|  
BPUM_3250___g    770 CCAAAACTAAGATTGAACC-----TT---ATCTGAAAGATGGGCATATTT    811

BSNT_05461___    810 -CTTTCAGATTTCTGTTAAAACGAAGGGCATCCTGACAGAAGACCA-AAA    857
                      ||||.|||||..|||.||.||.||.||.|..||..|.|||||.|| .|.
BPUM_3250___g    812 CCTTTAAGATTATTGTCAACACAAATGGAAAGCTTTCTGAAGATCAGTAT    861

BSNT_05461___    858 CCCGAATGAAAACTCCT----TTAGCA--------AAAGATATTTGCACA    895
                     ||.|.| ||||||||.|    |.||||        ||||||         
BPUM_3250___g    862 CCTGCA-GAAAACTCATACGATGAGCAGTACATCCAAAGAT---------    901

BSNT_05461___    896 GGCTGGAGAACATTTTTGAGAAAAAGCTTGAACGAGACGTAAAGCAGGTG    945
                        |.|||....||||||..||.||..|..|||       ||||     |
BPUM_3250___g    902 ---TTGAGCGTCTTTTTGCAAATAAAATCAAAC-------AAAG-----G    936

BSNT_05461___    946 ATGGATAAA---CTGCAGCACGAGTATAAAA----------CCGATCCGG    982
                     ||..|.|||   .|.||.||.|.|.| ||||          ..|||||..
BPUM_3250___g    937 ATTCAAAAAGCGGTTCATCATGTGCA-AAAAGAGGTGGGCGTTGATCCTA    985

BSNT_05461___    983 TCTTTTTATCAGAC--CACATAAGGATTCAACACCCTGACTATTGGAATA   1030
                     ||||||||  ||.|  ||..|..|.|||.||.||||||||||||||.|.|
BPUM_3250___g    986 TCTTTTTA--AGCCGGCAATTTCGTATTAAATACCCTGACTATTGGGAAA   1033

BSNT_05461___   1031 AAGTAAAAGGGCAT---------TGGGATGAAATATTTTCTGAGGCTGAT   1071
                     |         ||||         |||||||...|.|||...||.||.||.
BPUM_3250___g   1034 A---------GCATCGAGACGAATGGGATGCGCTCTTTCAAGAAGCGGAA   1074

BSNT_05461___   1072 TTTAAGTACGATATTTCTTTTAAAATCA------TTAACTTTGGCACGGT   1115
                     .|..|.||.||      |.|.|||.|||      |.||||||||..|.|.
BPUM_3250___g   1075 ATCGAATATGA------TGTCAAAGTCAGCATTTTAAACTTTGGGGCAGA   1118

BSNT_05461___   1116 GGG----------------AAA--GTAA   1125
                     |||                |||  ||||
BPUM_3250___g   1119 GGGCTCAACGAAAAGCTTCAAATGGTAA   1146


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