Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05470 and BPUM_3257
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_05470___ywtB.1.24716.seq
# -bsequence dna-align/BPUM_3257___ywtB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05470___ywtB-BPUM_3257___ywtB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05470___ywtB-BPUM_3257___ywtB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05470___ywtB
# 2: BPUM_3257___ywtB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1236
# Identity: 787/1236 (63.7%)
# Similarity: 787/1236 (63.7%)
# Gaps: 162/1236 (13.1%)
# Score: 2271.5
#
#
#=======================================
BSNT_05470___ 1 ATGAAAAAAGAACTGAGCTTTCATGAAAAGCTGCTAAAGCTGACAAAACA 50
|||||.|||.||.||||||||||.|||||||||||.||..|.|||||..|
BPUM_3257___y 1 ATGAATAAAAAATTGAGCTTTCAGGAAAAGCTGCTGAAAATCACAAAGAA 50
BSNT_05470___ 51 GCAAAAAAAGAAAACCAATAAGCACGTATTTATTGCCATTCCGATCGTTT 100
.|||||.||.|||||.|||||.||||||.|.|||||..|.||||||||..
BPUM_3257___y 51 CCAAAAGAAAAAAACGAATAAACACGTACTGATTGCTTTGCCGATCGTCA 100
BSNT_05470___ 101 TTGTCCTT----ATGTTCGCTTT-CATGT---GGGCGGGAAAAGCGGAAA 142
||| ||| || |||..||| |||.| |||| ||||..||.
BPUM_3257___y 101 TTG--CTTGTACAT-TTCTATTTACATTTATCGGGC-----AAGCAAAAG 142
BSNT_05470___ 143 CGCCGAAGGT-CAAAACGTATTCTGACGACGTACTCTCAGCCTCATTTGT 191
.|||.|..|| ||||| |.|..|.||..||.|.||..|.||.||.|||||
BPUM_3257___y 143 TGCCAACTGTACAAAA-GAACCCAGAAAACATCCTGACCGCTTCGTTTGT 191
BSNT_05470___ 192 AGGCGATATTATGATGGGACGCTATGTTGAAAAAGTAACGGA-------G 234
.||.||.||||||.|.|||.|..|.||.||.||||||||.|| |
BPUM_3257___y 192 CGGTGACATTATGTTTGGAAGAAACGTAGAGAAAGTAACTGACCGTTATG 241
BSNT_05470___ 235 CAAAAAGGGGCAGACAGTATTTTTCAATATGTTGAACCGAT-CTTTAGA- 282
.|||| ||| || |.|.||.|..||||...|||| || |||| ||
BPUM_3257___y 242 GAAAA-----CAG-CA-TCTCTTCCGCTATGCCAAACC-ATACTTT-GAT 282
BSNT_05470___ 283 GCCTCGGATTATGTAGCAGGAAACTTTGAAAACCCGGTAACCTATCAAAA 332
|..||.||||||||..|.||.|||||||||.|.||.|| |..||||
BPUM_3257___y 283 GTATCAGATTATGTGACTGGTAACTTTGAACATCCAGT--CGCATCA--- 327
BSNT_05470___ 333 GAATTATAAACAAGCAG---ATAAAG-AGATTCATCTGCAGACGAATAAG 378
.||.|..|||||||.| | |||| |.||||||.|..|.||..||.||
BPUM_3257___y 328 -GATCAAGAACAAGCGGCGCA-AAAGAATATTCATTTAAAAACAGATGAG 375
BSNT_05470___ 379 GAATCAGTGAAAGTCTTGAAGGATATGAATTTCACGGTTCTCAACAGCGC 428
||.||.||.||||..|||||||||.||||.|||.|.|...|.|||...||
BPUM_3257___y 376 GATTCTGTCAAAGCGTTGAAGGATTTGAAATTCTCTGCATTAAACTTTGC 425
BSNT_05470___ 429 AAACAACCACGCAATGGATTACGGCGTTCAGGGCATGAAAGATACGCTTG 478
.||.|||||.||....||.||.|| |||||.| |
BPUM_3257___y 426 GAATAACCATGCGGCAGACTATGG-----------TGAAAAA-------G 457
BSNT_05470___ 479 GAGAATTTGCGAAGCAAAAC-CTTGATATCGTTG---GAGCGG------- 517
| ||.||.|||||| .|||||..|.||| .|||||
BPUM_3257___y 458 G-------GCTAAACAAAACAATTGATGCCTTTGAACAAGCGGACATGGA 500
BSNT_05470___ 518 -GATACAG--------------CTTAAGTGATGCGAAAAAGAAAATTTCG 552
.|||||| |||.|| ||||||||..||||.||||||
BPUM_3257___y 501 TTATACAGGCGCAGGCCGTAACCTTCAG-GATGCGAAGCAGAACATTTCG 549
BSNT_05470___ 553 TACCAGAAAGTCAACGGGGTAACGATTGCGACGCTTGGCTTTACCGATGT 602
||..|..||||.||.||.||.|..||.||.||.|||||.|||||.|||||
BPUM_3257___y 550 TATAAAGAAGTAAATGGTGTCAAAATCGCTACACTTGGTTTTACAGATGT 599
BSNT_05470___ 603 GTCCGGGAAAGGTTTCGCGGCTAA---AAAGAATACGC----CGGGCGTG 645
||..||||||..||| ||| ||.|||| ||| |.||..|.
BPUM_3257___y 600 GTATGGGAAAAATTT------TAAAGCAACGAAT-CGCAAGGCAGGTATC 642
BSNT_05470___ 646 CTGCCCGCAGATCCTGAAATCTTCATCCCTATGATTTCAGAAGC----GA 691
.||||.||.|||||....|||||.||.||.||||||||..|.|| ||
BPUM_3257___y 643 TTGCCAGCCGATCCATCTATCTTTATTCCGATGATTTCGCAGGCTGCTGA 692
BSNT_05470___ 692 AAAAACATGCTGACATTGTTGTTGTGCAGTCACACTGGGGCCAAGAGTAT 741
|| |.||.||..|.||.|||||.||..|.||||||||.||.|||||.
BPUM_3257___y 693 AA----AGGCAGATGTCGTCGTTGTTCATGCTCACTGGGGACAGGAGTAC 738
BSNT_05470___ 742 GACAATGATCCAAACGACCGCCAGCGCCAGCTTGCAAGAGCCATGTCTGA 791
.|||||||...||||||..|.||..|..|..|.||||||||.|||||..|
BPUM_3257___y 739 AACAATGAGGTAAACGATAGACAAAGAGAATTGGCAAGAGCGATGTCAAA 788
BSNT_05470___ 792 TGCGGGAGCTGACATCATCGTCGGCCATCATCCGCACG-TCTTAGAACCG 840
.||.||.|||||.|||||..|.||...|||||||||.| |||| ||.||.
BPUM_3257___y 789 AGCTGGTGCTGATATCATTATTGGTGCTCATCCGCATGTTCTT-GAGCCA 837
BSNT_05470___ 841 ATTGAAGTATATAACGGAACCGTCATTTTCTACAGCCTCGGCAACTTTGT 890
||.|||||.||||||||.||.|..||.|||||.|||.|.||.||||||.|
BPUM_3257___y 838 ATGGAAGTCTATAACGGCACGGCGATCTTCTATAGCTTAGGAAACTTTAT 887
BSNT_05470___ 891 CTTTGACCAAGGCTGGACGAGAACAAGAGACAGTGCACTGGTTCAGTATC 940
.|||||||||||||||.|.||||||.|.||...||||||.||||||||||
BPUM_3257___y 888 TTTTGACCAAGGCTGGTCAAGAACACGTGATTCTGCACTTGTTCAGTATC 937
BSNT_05470___ 941 ACCTGAAGAAAAATGGAACAGGCCG--CTTTGAAG-TGACACCGATCGAT 987
|.|||||..||.||||||.|| || .||||||| ||.| ||.||..|.
BPUM_3257___y 938 ATCTGAATGAAGATGGAAAAG--CGACATTTGAAGTTGTC-CCAATGTAC 984
BSNT_05470___ 988 ATCCATGAAGCGACACCTGCACCTGTGAAAAAAGACAGCCTT--AAACAG 1035
|||.|.|||||.||||||||.||.||.|||..|| .|.|.|| ||.||
BPUM_3257___y 985 ATCAAAGAAGCAACACCTGCTCCAGTTAAAGCAG-GATCATTTGAATCA- 1032
BSNT_05470___ 1036 AAAACCATTATTCGCGAACTGACGAAAGACTCTAATTTCGCTTGGAAAGT 1085
|||.|||||||.||....|||||.||.|...|.|||...|.||||||||.
BPUM_3257___y 1033 AAATCCATTATCCGTATGCTGACAAATGGTACGAATGCGGATTGGAAAGA 1082
BSNT_05470___ 1086 AGAAGACGGA-AAACTGACGTTTGATATTGATCATAGTGACAAACTAAAA 1134
|.|||||||| |.|.|..| |||||..|.|||||...|||.|||.|.|||
BPUM_3257___y 1083 AAAAGACGGACACATTTTC-TTTGAAGTAGATCACGCTGATAAAGTTAAA 1131
BSNT_05470___ 1135 ---TCTAAATAA------------------------ 1143
|..|||.||
BPUM_3257___y 1132 CACTTAAAAGAAAACGGAGGGAAAGAGAAGAAATGA 1167
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