Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05480 and BPUM_3267

See Amino acid alignment / Visit BSNT_05480 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence dna-align/BSNT_05480___rbsC.1.24716.seq
#    -bsequence dna-align/BPUM_3267___rbsC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05480___rbsC-BPUM_3267___rbsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05480___rbsC-BPUM_3267___rbsC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05480___rbsC
# 2: BPUM_3267___rbsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 983
# Identity:     708/983 (72.0%)
# Similarity:   708/983 (72.0%)
# Gaps:          43/983 ( 4.4%)
# Score: 2457.5
# 
#
#=======================================

BSNT_05480___      1 ATGAAAACGGAAC-AACTGCAAACAGA-------ACAAAAACGGATTCAC     42
                     ||||||.|   || .|||.||||..||       ||||.|          
BPUM_3267___r      1 ATGAAACC---ACTTACTTCAAATGGACGATTTGACAACA----------     37

BSNT_05480___     43 TTCGACGGAGTCATGCAAAAACTCGGCCCGTTTCTT-GGTTTATTTATTC     91
                               ||||||||||.||.||.|| .||||| ||..|..|.||.|
BPUM_3267___r     38 ----------TCATGCAAAAGCTTGGGCC-ATTCTTAGGACTCATCATCC     76

BSNT_05480___     92 TCGTTATCATTGTATCTATTTTAAATCCAAGCTTTCTTGAACCGCTGAAT    141
                     |.||...||||||.|||||||||||.||...||||.|.||.||..|.||.
BPUM_3267___r     77 TTGTCGCCATTGTTTCTATTTTAAACCCGGCCTTTTTAGAGCCATTAAAC    126

BSNT_05480___    142 ATTTTAAACCTGCTTCGACAGGTCGCCATTAACGGATTAATCGCGTTCGG    191
                     ||.||||||.|.||..||||..||.|||||||.|...|.||.||.||.||
BPUM_3267___r    127 ATCTTAAACTTACTGAGACAAATCTCCATTAATGCCCTCATTGCCTTTGG    176

BSNT_05480___    192 GATGACCTTTGTCATTTTGACAGGCGGCATTGATCTTTCTGTCGGCGCTA    241
                     .|||||.|||||.|||||.||.||.||.||||||.|.||.|||||.||.|
BPUM_3267___r    177 TATGACATTTGTTATTTTAACCGGAGGAATTGATTTGTCGGTCGGTGCCA    226

BSNT_05480___    242 TTCTTGCCCTGTCAAGTGCTTTAGTTGCGGGAATGATTGTATCCGGTGTT    291
                     ||.|.||.||.||.|||||..|...|||.|||.|.||.||.||.|||.|.
BPUM_3267___r    227 TTTTAGCACTTTCTAGTGCACTGACTGCCGGATTTATCGTGTCTGGTATG    276

BSNT_05480___    292 GATCCGGTTCTCGCGATCATCCTTGGCTGTATCATTGGTGCCGTACTAGG    341
                     ||.|||.||.|.|||||.|||.|||||.|||||||.||.||..|.||.||
BPUM_3267___r    277 GACCCGATTTTAGCGATTATCGTTGGCAGTATCATCGGCGCTATTCTTGG    326

BSNT_05480___    342 CATGATCAACGGATTATTGATTACTAAAGGAAAAATGGCGCCCTTTATCG    391
                     .|||.|||||||..|.||.||.||.||||||||||||||.||.|||||||
BPUM_3267___r    327 GATGGTCAACGGTCTTTTAATCACAAAAGGAAAAATGGCTCCTTTTATCG    376

BSNT_05480___    392 CCACGCTTGCGACCATGACTGTGTTTCGCGGACTGACGCTAGTGTATACA    441
                     |.||.|||||.||.|||||..|.|||.|.|||.|.||.||.||.||||||
BPUM_3267___r    377 CAACACTTGCCACGATGACCATTTTTAGAGGATTAACACTTGTTTATACA    426

BSNT_05480___    442 GATGGAAATCCGATTACCGGACTTGGCACAAACTACGCTTTTCAGATGTT    491
                     ||.|||||.||||||||.|||||.|||.|.||||||||.||||||.|.||
BPUM_3267___r    427 GACGGAAACCCGATTACAGGACTCGGCTCGAACTACGCCTTTCAGTTATT    476

BSNT_05480___    492 CGGATGCGGTTACTTTTTAGGCATTCCTGTACCGGCGATTACGATGGTTC    541
                     |||..||||.||.||.||||||||||||||.||.|||||.||||||.|||
BPUM_3267___r    477 CGGCCGCGGATATTTCTTAGGCATTCCTGTTCCAGCGATCACGATGCTTC    526

BSNT_05480___    542 TTGCCTTTGTCATCCTTTGGGTGCTTCTTCATAAAACACCATTCGGCCGC    591
                     |..|||||.||.|.||.|||||.||.|||||||||||.||.||||||.|.
BPUM_3267___r    527 TCACCTTTATCGTACTATGGGTACTGCTTCATAAAACGCCTTTCGGCAGA    576

BSNT_05480___    592 CGAACGTACGCTATCGGCGGCAACGAAAAAGCCGCTCTCATTTCAGGCAT    641
                     .||||.||.||.||||||||.||.||||||||.||.||.||||||||.||
BPUM_3267___r    577 AGAACATATGCCATCGGCGGAAATGAAAAAGCTGCACTTATTTCAGGAAT    626

BSNT_05480___    642 CAAAGTGACGCGCGTGAAAGTGATGATCTATTCTTTAGCCGGGCTTT--T    689
                     ||||||..|||||||.|||.|.|||||.|||||.||.||.||  |||  |
BPUM_3267___r    627 CAAAGTACCGCGCGTAAAAATAATGATTTATTCATTGGCAGG--TTTCAT    674

BSNT_05480___    690 ATCCGCTCTTGCAGGTGCCATATTGACTTCCCGCCTGCATTCGGCCCAGC    739
                     .||.|||.|.|||||||||||.||.||.||.||.||..||||.||.||.|
BPUM_3267___r    675 GTCTGCTTTAGCAGGTGCCATTTTAACATCTCGTCTAAATTCTGCGCAAC    724

BSNT_05480___    740 CGACTGCGGGGGAATCGTACGAACTTGATGCTATCGCGGCAGTCGT-CTT    788
                     |.||.||.||....||.||.||.||||||||.||.||.||.||.|| |||
BPUM_3267___r    725 CAACAGCTGGTACCTCCTATGAGCTTGATGCGATTGCTGCTGTTGTACTT    774

BSNT_05480___    789 AGGCGGAACAAGTCTTTCCGGCGGCCGAGGACGCATTGTTGGCACGTTAA    838
                      |||||.|||||.||.||||||||..|||||||.|||||.|||||..|.|
BPUM_3267___r    775 -GGCGGGACAAGCCTGTCCGGCGGAAGAGGACGAATTGTCGGCACACTCA    823

BSNT_05480___    839 TCGGGGTGCTGATCATCGGCACACTT-AATAACGGGCTTAATCTGCTTGG    887
                     |||||||.||.|||||||| |..||| ||.||.||..|.||..|.|||||
BPUM_3267___r    824 TCGGGGTACTCATCATCGG-AGTCTTGAACAATGGTATGAACTTACTTGG    872

BSNT_05480___    888 CGTCTCATCATTTTATC-AGCTGGTTGTCAAAGGGATTGTCATCTTAATT    936
                     .||.||||||||.|||| |.|| |||||.|||||||||||||||||.|||
BPUM_3267___r    873 AGTTTCATCATTCTATCAATCT-GTTGTGAAAGGGATTGTCATCTTGATT    921

BSNT_05480___    937 GCGGTATTGTTAGACCGCAAGAAGTCAGCATAG    969
                     ||.||..|..|||||.|.|||||.||.||.||.
BPUM_3267___r    922 GCAGTCCTACTAGACAGAAAGAAATCTGCTTAA    954


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05480 and BPUM_3267

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
