Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05502 and BPUM_3269

See Amino acid alignment / Visit BSNT_05502 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:08
# Commandline: needle
#    -asequence dna-align/BSNT_05502___ywrF.1.24716.seq
#    -bsequence dna-align/BPUM_3269___ywrF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05502___ywrF-BPUM_3269___ywrF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05502___ywrF-BPUM_3269___ywrF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05502___ywrF
# 2: BPUM_3269___ywrF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 668
# Identity:     422/668 (63.2%)
# Similarity:   422/668 (63.2%)
# Gaps:         115/668 (17.2%)
# Score: 1307.5
# 
#
#=======================================

BSNT_05502___      1 ATGTACATATTTCAAGCTGATCAGCTTAGTGCC--AAAGACACATACAAG     48
                     |||               ||||||||  .|..|  |||||..||||.||.
BPUM_3269___y      1 ATG---------------GATCAGCT--ATCACGAAAAGAAGCATATAAA     33

BSNT_05502___     49 CTATTGTCAGGTACCGTTATTCCCCGCCCCATTGCATTTGTGACAACACT     98
                     .||||.||.|||.|..||.||||.||.||.|||||.|||.|.||||..||
BPUM_3269___y     34 TTATTATCGGGTTCTATTGTTCCACGACCGATTGCGTTTATTACAAGTCT     83

BSNT_05502___     99 TTCTTCAGAAGGAGCG-----GTCAATGCCGCGCCTTTCAGTTTTTATAA    143
                     .|||..|||     ||     |||||||||||.||.||.|||||.|.|||
BPUM_3269___y     84 GTCTAAAGA-----CGATATCGTCAATGCCGCACCATTTAGTTTCTTTAA    128

BSNT_05502___    144 CGTCGTCAGCTCAGATCCTCCGCTTCTCAGTATTTCTGTTAACAGGACG-    192
                     .|||.|||||..|.|.||.|||||.|||....|||||    |..||||| 
BPUM_3269___y    129 TGTCATCAGCGGACACCCACCGCTCCTCGCCGTTTCT----ATCGGACGA    174

BSNT_05502___    193 ---GAAGGACGCCAA----AAAGATACAGCGCGAAACGCA-GTG---GAG    231
                        |||||.|    |    |||||||||||||    .||| |||   ||.
BPUM_3269___y    175 CGAGAAGGTC----AGATGAAAGATACAGCGC----AGCATGTGATTGAC    216

BSNT_05502___    232 AACGGAGAATTTGTCGTTCATGTCAGTGATGAAGCCATCATTGAAGATAT    281
                     |..|||||||||||.||.|||||.|||||||||||.||.||.||||||||
BPUM_3269___y    217 AGGGGAGAATTTGTGGTCCATGTGAGTGATGAAGCGATAATAGAAGATAT    266

BSNT_05502___    282 CAATGAAACAGCTGC-AAGCTTAAGGCC---GGATGAAAGCGAGCTTACA    327
                     .||.||||||||||| |.|||    |||   |||.||.||.|||||....
BPUM_3269___y    267 TAACGAAACAGCTGCTACGCT----GCCACAGGAAGAGAGTGAGCTGGAT    312

BSNT_05502___    328 CGCACCTCGCTTCATCCTGTTGAAAGCAAAGCTGTTTCAGTTCCCGGCAT    377
                     ||.|||...|||||||..||..|.|||.|.|..|||||||||||.||.||
BPUM_3269___y    313 CGAACCGGTCTTCATCAAGTACAGAGCCATGTCGTTTCAGTTCCGGGAAT    362

BSNT_05502___    378 TAAGGAAGCCCGCGTTCGCTTTGA--------GTGCAAATTAGAGCGGCA    419
                     |.|||||||.||..||||||||||        .||.|||        |||
BPUM_3269___y    363 TCAGGAAGCACGTATTCGCTTTGAATGTCGGCTTGAAAA--------GCA    404

BSNT_05502___    420 TATTACCTTTGACAATGATCAAGG---CATCACTACAGCAGATCTGCTCA    466
                     |.||||||||.|.||||||.||||   .|||   ||.|..||||...|||
BPUM_3269___y    405 TCTTACCTTTCAAAATGATGAAGGGGAGATC---ACGGTCGATCATATCA    451

BSNT_05502___    467 TCGGAAGGGTTGTCTGCTTC-CACCTAGATGAAAAGGTGTATGATGCAGA    515
                     |.||..|||||||.|| |.| ||..|||||||....|||||||||||.||
BPUM_3269___y    452 TTGGCCGGGTTGTGTG-TGCGCATTTAGATGAGGCTGTGTATGATGCGGA    500

BSNT_05502___    516 AAAGGGATATATTTTAACGGATGAATTAAAACCTGCCTCACGATTGGCGG    565
                     |||.||.|||.|||..||..||||||||||.||.|.|.||||.||.||||
BPUM_3269___y    501 AAAAGGTTATGTTTCGACTCATGAATTAAAGCCAGTCGCACGTTTAGCGG    550

BSNT_05502___    566 GAAATCACTATGCCAAGCTGGGGGAAGAATTCACAC-TGATTCGTCCCAG    614
                     |||||.|.||.|||.|..|.|||           || |.|||.||    |
BPUM_3269___y    551 GAAATGATTACGCCCATTTAGGG-----------ACGTCATTTGT----G    585

BSNT_05502___    615 CTGA--------------    618
                     ||||              
BPUM_3269___y    586 CTGAAAAGACCAGAATAA    603


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