Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05540 and BPUM_3281

See Amino acid alignment / Visit BSNT_05540 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:09
# Commandline: needle
#    -asequence dna-align/BSNT_05540___ywpJ.1.24716.seq
#    -bsequence dna-align/BPUM_3281___ywpJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05540___ywpJ-BPUM_3281___ywpJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05540___ywpJ-BPUM_3281___ywpJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05540___ywpJ
# 2: BPUM_3281___ywpJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 927
# Identity:     570/927 (61.5%)
# Similarity:   570/927 (61.5%)
# Gaps:         171/927 (18.4%)
# Score: 1701.0
# 
#
#=======================================

BSNT_05540___      1 GTGAAATTAATTGCGATTGATTTAGATGGAACCTTACTCAACAGCAAGCA     50
                                               |.|||   ||.|.||||..||   
BPUM_3281___y      1 --------------------------TTGAA---TAGTGAACACAAA---     18

BSNT_05540___     51 TCAGGTAAGCTTGGAAAATGAAAACGCACTGCGGCAGGC----------G     90
                         ||.|||..|||||||||            ||||||          |
BPUM_3281___y     19 ----GTGAGCCGGGAAAATGA------------GCAGGCATTAAAGGAAG     52

BSNT_05540___     91 CAGCTGGACG----GCATTGAAGTGGTGGTGTCAACTGGGCGCGCTCATT    136
                     ||||  |.||    |.||.|||||.||.||.||.||.||..|.||..|||
BPUM_3281___y     53 CAGC--GGCGAATAGAATGGAAGTTGTCGTTTCTACAGGAAGAGCGTATT    100

BSNT_05540___    137 TTGACGTCATGTCAATCTTTGAACCGCTGGGGATCAAAACATGGGTCATC    186
                     ||||.||.|.|||.||.|||||...|||.|||||.||.||||||||.||.
BPUM_3281___y    101 TTGATGTGAGGTCTATTTTTGATGAGCTTGGGATGAATACATGGGTGATT    150

BSNT_05540___    187 AGTGCAAACGGCGCCGTCATTCACGATCCCGAC--GGCAGGCTTTATCAT    234
                     |||||.||.||.||.||.|||||.||| |||||  ||||.| |.||||||
BPUM_3281___y    151 AGTGCCAATGGAGCTGTGATTCATGAT-CCGACTGGGCAAG-TATATCAT    198

BSNT_05540___    235 ------------CACGAAACGATTGATAAG---AAACGGGCGTATGACAT    269
                                 ||.|||      ||.|||   |||||         |||
BPUM_3281___y    199 TCAGCTGCTTTACAAGAA------GAAAAGGCCAAACG---------CAT    233

BSNT_05540___    270 TCTCTCATGGCTTGAGTCGGAAAAC-----TATTATTATGAGGTATTCAC    314
                     ..|.|||||||||||     |.|||     |||||.|||||.||.||.||
BPUM_3281___y    234 ATTATCATGGCTTGA-----AGAACGTGGTTATTACTATGAAGTTTTTAC    278

BSNT_05540___    315 AGGTTCAGCGATTTATACGCCGCAAAAC--GGCAGAGAACTTCTTGATGT    362
                     |.....|||.||||..||.|||  ||.|  ||.|||||.|||||.|...|
BPUM_3281___y    279 AAACGAAGCCATTTTCACACCG--AATCGTGGTAGAGAGCTTCTGGCGAT    326

BSNT_05540___    363 TGAGCTGGACAGATTCAGAAGCGCAAACCCGGAAACAGATCTTTCTGTCC    412
                     |||..|||||.|.||.|.|||.|||||.||.|||||.||.||...|||..
BPUM_3281___y    327 TGAAATGGACCGCTTAAAAAGTGCAAATCCAGAAACGGACCTGAGTGTTT    376

BSNT_05540___    413 TTAAGCAGGCGGCCGAGGTGCAATACAGCCAATCGGGCTTTGCTTACATT    462
                     |.||.||.|||||.||.||.||||||||.||.||.||.|||.||||.|||
BPUM_3281___y    377 TAAAACAAGCGGCAGAAGTTCAATACAGTCAGTCAGGTTTTTCTTATATT    426

BSNT_05540___    463 AACTCCTTTCAAGAGCTGTTTGAAGCCGATC---AGC---CAATCGATTT    506
                     .|..|.|.|.|||||.|||||.|.|..||||   |||   ||      ||
BPUM_3281___y    427 GATACATATAAAGAGTTGTTTCATGAGGATCGGAAGCTTTCA------TT    470

BSNT_05540___    507 TTACAATATTCTCGGCTTTTCTTTCTTCAAAGAAAAGCTTG-AGGCAGGC    555
                     .|||||.||..|.||.||.||||||||..||| |.||.||| |||||||.
BPUM_3281___y    471 CTACAACATCTTAGGTTTCTCTTTCTTTGAAG-ACAGATTGAAGGCAGGG    519

BSNT_05540___    556 TGGAAAAGAT-------ATGAGCATGCCGAAGATTTGACGCTTGTCAGTT    598
                     |||    |||       .|||..||||  ||| |.|.||..|.|||||||
BPUM_3281___y    520 TGG----GATCAGTTTGGTGATGATGC--AAG-TGTCACAATGGTCAGTT    562

BSNT_05540___    599 CGGCTGAGCACAACTTTGAGCTTTCTTCCCGCAAA----GCTTCCAAGGG    644
                     |.||.||.||.||||||||..||..|    |||||    |||||.||.||
BPUM_3281___y    563 CAGCCGATCATAACTTTGAAATTGGT----GCAAAGGACGCTTCTAAAGG    608

BSNT_05540___    645 GCAGGCGCTGAAGAGGCTTGCAAAACAGCTGAATATTCCGCT---CGAGG    691
                     .||.||..|.|..|||||.|||.|||..||...||||||..|   |.|| 
BPUM_3281___y    609 CCAAGCATTAACAAGGCTGGCAGAACGTCTTGGTATTCCTTTAAGCCAG-    657

BSNT_05540___    692 AAACCGCTGCTGTAGGTGACAGTTTAAATGACAAATCGATGC-TGGAG--    738
                       ||.||.||||||||.||.||||||||||||.||||||||| |.|||  
BPUM_3281___y    658 --ACAGCGGCTGTAGGAGATAGTTTAAATGACGAATCGATGCTTCGAGCA    705

BSNT_05540___    739 GCTG----CGGGAAAAGGTGTAGCGATGGGCAATGCCCGGGAAGATATCA    784
                     ||||    .||||       |.||||||||||||||..|..|.|||||.|
BPUM_3281___y    706 GCTGGTGTTGGGA-------TTGCGATGGGCAATGCGAGACAGGATATAA    748

BSNT_05540___    785 AATCGATAGCCGATGCGGTCACCTTAACCAATGACGAACATGGTGTCGCA    834
                     ||...||.||.|||...|||||.|||||.|||||.|||||||||||.||.
BPUM_3281___y    749 AAGAAATCGCTGATCATGTCACGTTAACAAATGATGAACATGGTGTGGCG    798

BSNT_05540___    835 CATATGATGAAACA---TTTGATGTAG    858
                     ||||||||...|||   |||||..|||
BPUM_3281___y    799 CATATGATTCGACACCTTTTGAAATAG    825


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