Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05553 and BPUM_3285
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_05553.1.24716.seq
# -bsequence dna-align/BPUM_3285___mscL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05553-BPUM_3285___mscL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05553-BPUM_3285___mscL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05553
# 2: BPUM_3285___mscL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 482
# Identity: 271/482 (56.2%)
# Similarity: 271/482 (56.2%)
# Gaps: 100/482 (20.7%)
# Score: 792.5
#
#
#=======================================
BSNT_05553 1 TTGAAAAAAGGCAAATGGCCAGCGGCACATTTGTCTTTTTTTCTTTACAA 50
BPUM_3285___m 0 -------------------------------------------------- 0
BSNT_05553 51 ATATAGAAAAGCAGGTGATTGTATGTGGAATGAATTTAAAGCCTTTGCCA 100
|||..|||.|||||||.||..|||||..
BPUM_3285___m 1 ----------------------ATGCTGAAAGAATTTAGAGAATTTGCAG 28
BSNT_05553 101 TGCGGGGGAATATCGTAGACCTTGCGATTGGTGTTGTGATAGGCGGCGCT 150
|...|||.|||.||.|.|||.|.||..|.|||||..|.||.||.||.||.
BPUM_3285___m 29 TCAAGGGAAATGTCATTGACTTGGCTGTAGGTGTCATCATTGGGGGAGCA 78
BSNT_05553 151 TTCGGAAAGATCGTCACATCTCTAGTAAATGATATCATTATGCCTTTGGT 200
||.||.||.||.|||||.|||||.||.||||||.|.||.|||||..|.||
BPUM_3285___m 79 TTTGGCAAAATTGTCACTTCTCTTGTGAATGATTTGATCATGCCGCTCGT 128
BSNT_05553 201 CGGTTTGCTGCTGGGAGGGCTTGACTTTTCAGGCCTGTCGTTTACGTTTG 250
.|||.|..|..|.||.||.|.|||.|||...||.||.||..|||.|.|.|
BPUM_3285___m 129 TGGTATTATTATTGGCGGACATGATTTTAGCGGTCTATCTATTAAGATCG 178
BSNT_05553 251 GCGATGCTGTAGTGAAATATGGAAGCTTTATACAGAC---GATTGTGAAC 297
|...||||..|.|...||||||||||||.|||||.|| ||||| |.
BPUM_3285___m 179 GATCTGCTCAAATTTTATATGGAAGCTTCATACAAACAGTGATTG---AT 225
BSNT_05553 298 TTCTTAATTATATCGTTCTCCATTTTTATCGTCATTCGGACTTTGAATGG 347
|||||.|||||.||.||.||||||||||||.|.|||||...|||||||..
BPUM_3285___m 226 TTCTTGATTATTTCTTTTTCCATTTTTATCTTTATTCGTTATTTGAATAA 275
BSNT_05553 348 GTTAAGGCGCAAAAAAGAAGCAGCAGAAGAAGAGGCTGCGGAGGAAGCGA 397
.||||..||.|||||.|.|| || ||||||||||.| |..|||.||.
BPUM_3285___m 276 ATTAAAACGGAAAAAGGTAG-AG--GAAGAAGAGGTT---GTAGAAACGC 319
BSNT_05553 398 TGGATGCGCA---GGAGGAGCTCCTGAAAGAAATCAGAGACCTGCTGAAG 444
.|||| || |||.|...|.||.|.||||||.|||||.||..||||.
BPUM_3285___m 320 CGGAT---CAAACGGAAGTTTTACTAACAGAAATTAGAGATCTTTTGAAA 366
BSNT_05553 445 CAGC-AAGC------AAAG-TCTTCGGAATAA 468
||.| |||| |||| |.||| ||||.
BPUM_3285___m 367 CATCAAAGCCAATCGAAAGATGTTC--AATAG 396
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