Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05554 and BPUM_3286

See Amino acid alignment / Visit BSNT_05554 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_05554___ywpB.1.24716.seq
#    -bsequence dna-align/BPUM_3286___fabZ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05554___ywpB-BPUM_3286___fabZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05554___ywpB-BPUM_3286___fabZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05554___ywpB
# 2: BPUM_3286___fabZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 461
# Identity:     308/461 (66.8%)
# Similarity:   308/461 (66.8%)
# Gaps:          61/461 (13.2%)
# Score: 1019.5
# 
#
#=======================================

BSNT_05554___      1 ATGCTTGATACTCAGCAAATTAAAGAAATTATTCCTCACCGTTATCCGTT     50
                     |||||||||.|||||||||||.||||.||||||||.|||||||||||.||
BPUM_3286___f      1 ATGCTTGATGCTCAGCAAATTCAAGACATTATTCCACACCGTTATCCATT     50

BSNT_05554___     51 TTTGCTTGTGGATCGGATTACGGAAGTTGA---AGAGGGCAAACGGGCAA     97
                     .||..|.||.||.||.|||...||.|||||   ||||   ||..|.||  
BPUM_3286___f     51 CTTATTGGTCGACCGTATTTTAGAGGTTGAGGGAGAG---AAGAGAGC--     95

BSNT_05554___     98 AAGGCT----ATAAAAATGTAACCGCTAATGAAGAGTTCTTTAACGGACA    143
                       ||.|    .|||||||||.||.|..||.|||||.||.|||||.||.||
BPUM_3286___f     96 --GGTTGGGATTAAAAATGTCACAGTGAACGAAGAATTTTTTAATGGTCA    143

BSNT_05554___    144 TTTTCCTCAG--TACCCGGTTATGCCCGGCGTATTAATCGTAGAAGCACT    191
                     |||  |.|||  |||||.||.|||||.||.||..|.||.|||||||||||
BPUM_3286___f    144 TTT--CCCAGGATACCCAGTCATGCCGGGTGTGCTTATTGTAGAAGCACT    191

BSNT_05554___    192 CGCTCAAGTCGGAGCTGTTGCG-------ATGTT--GATTAAAGAAGAAA    232
                     .|       ||.||.||||..|       |||||  ||  ||||||||||
BPUM_3286___f    192 TG-------CGCAGGTGTTTGGGGTCATTATGTTAGGA--AAAGAAGAAA    232

BSNT_05554___    233 ACCGCGGCAGACTGGCTTTTTTTGCAGGCATTGATAACTGCCGCTTTAAA    282
                     ||...||.|.|.|.|.|||.||||||||.|||||...||||||.||.|||
BPUM_3286___f    233 ACAAAGGGAAAATTGGTTTATTTGCAGGAATTGACGGCTGCCGTTTCAAA    282

BSNT_05554___    283 AAACAAGTCAAGCCTGGTGACCAGCTTCACCTTGAGGTTGAAATCATTCG    332
                     |.||||||.||||||||.||.|||||||...|.|||||.|||.|.|..||
BPUM_3286___f    283 AGACAAGTGAAGCCTGGCGATCAGCTTCGTTTAGAGGTAGAAGTGACGCG    332

BSNT_05554___    333 T--------GCCCGCGGCACAATCGGGCGCGGAAAAGGCGTTGCCACAGT    374
                     |        .||.|..|||.||        |||||||..||.||||||||
BPUM_3286___f    333 TCTTAGAGGTCCAGTCGCAAAA--------GGAAAAGCAGTAGCCACAGT    374

BSNT_05554___    375 TGATGGCGAAGTCGTTTGCGAAGTAGAACTGACTTTTGCCCTCGG-----    419
                     .|||||||||||.|..|||||||.||||||.||.|||.|..||||     
BPUM_3286___f    375 AGATGGCGAAGTGGCATGCGAAGCAGAACTCACATTTTCTATCGGTCCTA    424

BSNT_05554___    420 -AGAATAA---    426
                      ||.||.|   
BPUM_3286___f    425 AAGTATCATGA    435


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.