Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05562 and BPUM_3292
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_05562___ywoH.1.24716.seq
# -bsequence dna-align/BPUM_3292___ywoH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05562___ywoH-BPUM_3292___ywoH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05562___ywoH-BPUM_3292___ywoH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05562___ywoH
# 2: BPUM_3292___ywoH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 454
# Identity: 275/454 (60.6%)
# Similarity: 275/454 (60.6%)
# Gaps: 80/454 (17.6%)
# Score: 726.5
#
#
#=======================================
BSNT_05562___ 1 ATGTCCTACG-TCAACAGACACCTCATT-CATCAAATCAACCAAAGCGCC 48
||| ..|||| |.||.|||.| .|..|| ||||||||..|||||||
BPUM_3292___y 1 ATG-GATACGTTAAATAGAGA-GTGTTTACATCAAATACACCAAAG---- 44
BSNT_05562___ 49 CGCCTGATTG----CCAAGAAAGCCAATGAACAGCTAGAGCCATTCGGC- 93
||||.||||| |.||.||.||.||.|||..||| |.|.||
BPUM_3292___y 45 CGCCAGATTGCTGTCTAAAAAGGCGAACGAAGCGCT-------TGCTGCT 87
BSNT_05562___ 94 ----CTTTATTCA--TCCCAATGGTCAGTTTTATATTGTTTGCGTACGAT 137
.|||.|.|| |||||||||.|.||..|.|.|||||||..|||..|
BPUM_3292___y 88 TATGATTTGTACATGTCCCAATGGACTGTACTTTTTTGTTTGGATACATT 137
BSNT_05562___ 138 CGGACCAATGACTCAAAAAGAGATTTGGTCCTATTTAAATGTGGAAGCGC 187
|||.||.|..||.||||||||.||||||.|.||.||.||.||.|||||.|
BPUM_3292___y 138 CGGCCCGAAAACCCAAAAAGACATTTGGACATACTTGAACGTCGAAGCTC 187
BSNT_05562___ 188 CGACTGTGACTCGGACGATCAAACGCCTGGAGGAGAACGGCTGGGTTCAG 237
|.||..|.||.||.||..|.|..||.||.||.|..||.||||||||.||
BPUM_3292___y 188 CAACCATTACCCGAACCGTAACCCGTCTAGAAGCAAATGGCTGGGTGCA- 236
BSNT_05562___ 238 AGACGG---CAAGGTGAAGACAAACGGGAAAAACTTGTTGTCCTCACAAA 284
|||| |||||..||||||||||.|||||.||..|.||..|.|||.|
BPUM_3292___y 237 --ACGGGTACAAGGAAAAGACAAACGTGAAAACCTGATCGTGATGACAGA 284
BSNT_05562___ 285 AG-----AAG--CCGAGAAAAAATACGAAGAAATC-AATGTGAAAATGCT 326
.| ||| ||| ||..||||||||| ||.|| |..|||
BPUM_3292___y 285 TGATACTAAGGCCCG-------ATTTGAAGAAATCAAACGT-ACGATG-- 324
BSNT_05562___ 327 GA--AATTCGAGGAAGAGCTG-CTTGCTGATTTCCGGGATGAAGATAAAG 373
|| ||||.||.||||| .|| |||||.||||||....|.|||||.|||.
BPUM_3292___y 325 GAACAATTTGAAGAAGA-ATGTCTTGCAGATTTCACCCACGAAGAAAAAC 373
BSNT_05562___ 374 AAGCTTTTTCTCATTTATTC-CGCATGTTTTTACAACAATGA-------- 414
|| |||.|..||.| | |||||||..|||.|
BPUM_3292___y 374 AA-------CTCCTCCATACAC------TTTTACACAAATTATCAACTGA 410
BSNT_05562___ 414 ---- 414
BPUM_3292___y 411 ATAG 414
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