Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05577 and BPUM_3294

See Amino acid alignment / Visit BSNT_05577 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_05577___ywoA.1.24716.seq
#    -bsequence dna-align/BPUM_3294___ywoA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05577___ywoA-BPUM_3294___ywoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05577___ywoA-BPUM_3294___ywoA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05577___ywoA
# 2: BPUM_3294___ywoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 680
# Identity:     389/680 (57.2%)
# Similarity:   389/680 (57.2%)
# Gaps:         148/680 (21.8%)
# Score: 1004.0
# 
#
#=======================================

BSNT_05577___      1 ------------------------------TTGAACTACGAAATTTTTAA     20
                                                   |||||.||||||.|.|||||
BPUM_3294___y      1 TTGGCATTAAGCGAAGGTATAGGTGATGTTTTGAATTACGAACTGTTTAA     50

BSNT_05577___     21 AGCAATCCATGGACTATCTCATCACAATTC---AGTTCTCGAT---TCCA     64
                     |...||.||.||..|..||||||   ||||   |.||.|.|||   .|| 
BPUM_3294___y     51 ATTGATACACGGGATGGCTCATC---ATTCTGAATTTTTAGATCAGGCC-     96

BSNT_05577___     65 TTATGGTCTTCATAACGGAATATGCCATTATCGCCTATGCCCTTATCCTA    114
                       |||.|.|||||.|||.||.|.|||.||.|.|..|||||||||.|..||
BPUM_3294___y     97 --ATGATTTTCATTACGAAAAAGGCCCTTCTTGTGTATGCCCTTGTTTTA    144

BSNT_05577___    115 TTGGCAAT---CTGGCTGTTTGGGAA-CACACA---AAGCAGAAAACATG    157
                     |||   ||   ||||.|.||.||.|| ||||.|   |||    ||.||||
BPUM_3294___y    145 TTG---ATTTGCTGGTTTTTAGGTAATCACAAATTTAAG----AAGCATG    187

BSNT_05577___    158 TGCTATACGCAGGCATCACAGGAATTGCAGGC-CTTGTGATCAACTATTT    206
                     |..|.|...|.||..|.|||||.||.|| ||| |||.|..||||  .|||
BPUM_3294___y    188 TCTTCTTTTCTGGTGTAACAGGCATCGC-GGCACTTATCGTCAA--TTTT    234

BSNT_05577___    207 G--ATTACGCTTGTTT-ATTTCGAACCGCGCCCGTTCGTTGCGCATACAG    253
                     |  |||||.| ||||| |||..||...|||.|||||.||.|||||||.||
BPUM_3294___y    235 GCCATTACAC-TGTTTCATTATGAGGAGCGGCCGTTTGTGGCGCATAAAG    283

BSNT_05577___    254 TGCATACACTGATTCCGCATGCTGCGGATGCTTCATTTCCAAGTGACCAC    303
                     |..|.|||||.||||||||..|.||.||.|||||.||.|||||||||||.
BPUM_3294___y    284 TTGACACACTCATTCCGCACTCAGCAGACGCTTCCTTCCCAAGTGACCAT    333

BSNT_05577___    304 ACGACAGGCGCATTAGCGATTTCTATTG-----CGATGCTTTTCAGAAAC    348
                     ||.|||||.|||.|.||..||||..|||     |||| ||..|.|.|||.
BPUM_3294___y    334 ACAACAGGTGCACTGGCTCTTTCACTTGCCATTCGAT-CTCGTAATAAAA    382

BSNT_05577___    349 CGC-----AAAATCGGCTGGCCGCTTG-TCATTTTTGGGCTTTTGACAGG    392
                     .||     ||.||          |||| ||.|.|||||..|..|.|||||
BPUM_3294___y    383 AGCTTGGTAACAT----------CTTGCTCGTCTTTGGATTACTCACAGG    422

BSNT_05577___    393 CTTTTCGAGAATTTGGGTGGGACATCACTATCCGGTAGATGTATTGGGCA    442
                     .||.||..|.||.|||||.||.||.||.|||||..|||||||.||.||||
BPUM_3294___y    423 ATTCTCCCGCATCTGGGTCGGTCACCATTATCCATTAGATGTTTTAGGCA    472

BSNT_05577___    443 GCCTCGT--TATCGCCATCATTATCGGGTTCCTTTTCTT---TAGATTTT    487
                     ||.|..|  |||||  ||..|..|||.||   ||.||.|   ||.|||.|
BPUM_3294___y    473 GCTTGATTGTATCG--ATTGTGGTCGTGT---TTATCATGAATAAATTAT    517

BSNT_05577___    488 CAGATCTGCTTCGCCCGTTCGTCGATTTG-----GTCGTGAGGATCTATG    532
                      .||..|.|||.|.|   || ||.|.|||     .||||.|...||||||
BPUM_3294___y    518 -GGAAGTTCTTTGAC---TC-TCCAATTGATCGCATCGTCACTTTCTATG    562

BSNT_05577___    533 A-AGCCATTATCAATAAACTGACGAAAAAA--------------CCAACC    567
                     | |        ||||    |||.|.|||||              |.||..
BPUM_3294___y    563 AGA--------CAAT----TGAAGGAAAAATATTCAGAAGGAAGCAAAAG    600

BSNT_05577___    568 GATCA--------AAATTTCTAA-------    582
                     |||||        |..|.|||||       
BPUM_3294___y    601 GATCAGGGCTCTGACCTGTCTAACTCTTAA    630


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