Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01508 and BPUM_3312

See Amino acid alignment / Visit BSNT_01508 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:03
# Commandline: needle
#    -asequence dna-align/BSNT_01508___rpsN.1.24716.seq
#    -bsequence dna-align/BPUM_3312___rpsN2.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01508___rpsN-BPUM_3312___rpsN2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01508___rpsN-BPUM_3312___rpsN2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01508___rpsN
# 2: BPUM_3312___rpsN2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 283
# Identity:     196/283 (69.3%)
# Similarity:   196/283 (69.3%)
# Gaps:          26/283 ( 9.2%)
# Score: 618.5
# 
#
#=======================================

BSNT_01508___      1 TTGGCTAAAAAATCAAAAGTGGCAAAAGAGTTAAAACGCCAACAGCTTG-     49
                     .||||.||.|||||.|||.|.||.|||||...|||.||.||.||||||| 
BPUM_3312___r      1 GTGGCAAAGAAATCTAAAATTGCTAAAGAAAAAAAGCGGCAGCAGCTTGT     50

BSNT_01508___     50 -TTGAGCAATACGCTGGTATT-AGACGCGAGTTGAAGGAAAAAGGAGATT     97
                      ||||  ||||.||| |.||| |||...|||||.||.|||.||||.||.|
BPUM_3312___r     51 ATTGA--AATATGCT-GAATTAAGAAAAGAGTTAAAAGAACAAGGTGACT     97

BSNT_01508___     98 ACGAGGCACTCAGCAAGCTGCCAAGAGATTCAGC----ACCGG--GAAGG    141
                     |.||.||..|..|.||..|.||.|||||.||..|    |||.|  .||  
BPUM_3312___r     98 ATGAAGCTTTACGGAAATTACCTAGAGACTCTTCCCCTACCCGCTTAA--    145

BSNT_01508___    142 CTCCACAACCGCTGT--ATGGTAACGGGACGCCCGAGAGGATA--TATGA    187
                         |.|||||||||  ||  ||||.||.|||||.|||||.||  ||.||
BPUM_3312___r    146 ----AAAACCGCTGTGAAT--TAACCGGTCGCCCTAGAGGTTACTTACGA    189

BSNT_01508___    188 GGAAGTTTAAAATGTCCAGAATCGCTTTCAGGGAGCTGGCCCATAAAGGC    237
                       ||.|||||||||||.|||||.|||||..|.|||||.|||.||||.|||
BPUM_3312___r    190 --AAATTTAAAATGTCTAGAATTGCTTTTCGTGAGCTTGCCTATAAGGGC    237

BSNT_01508___    238 CAGGTTCCCGGTGTGAAAAAAGCAAGCTGGTAA    270
                     ||..||||.||.|||||||||.|.||.||||||
BPUM_3312___r    238 CACATTCCAGGAGTGAAAAAATCGAGTTGGTAA    270


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