Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05617 and BPUM_3322
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_05617___ywmB.1.24716.seq
# -bsequence dna-align/BPUM_3322___ywmB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05617___ywmB-BPUM_3322___ywmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05617___ywmB-BPUM_3322___ywmB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05617___ywmB
# 2: BPUM_3322___ywmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 802
# Identity: 526/802 (65.6%)
# Similarity: 526/802 (65.6%)
# Gaps: 122/802 (15.2%)
# Score: 1633.0
#
#
#=======================================
BSNT_05617___ 1 ATGAACATGAAGAAA------AAACAAGTAAGCCACGCTATTATCATTTC 44
.|| ||||| ||| |.||..|||| .||||..|||||
BPUM_3322___y 1 ------GTG-AGAAAGTATATAAA-AGGTTGGCCA--TTATTTGCATTT- 39
BSNT_05617___ 45 CGTCATGTTAAGCTTCG------TCATT---GCTGTTTTCCATACCATCC 85
..||.|.|| ||.| |.||| |.|||| |
BPUM_3322___y 40 ATTCTTTTT----TTTGTTCTGATGATTCAAGGTGTT------------C 73
BSNT_05617___ 86 ATGCGAGTGAATTAACGCCGTTAGCACAAATGGCAGAGGGGATGGAACGC 135
.||||...||||...|.|||.|.||.|||||.|||||.||..||.|...|
BPUM_3322___y 74 GTGCGGAAGAATCTTCTCCGCTCGCCCAAATAGCAGAAGGTCTGAATAAC 123
BSNT_05617___ 136 CA--AGATGTGTCAA-TAGATAAGTGGACATTGCATGC-AAAACA----- 176
|| |.|| |.|| |||||...|||||..|.||.|| ||||||
BPUM_3322___y 124 CAGCAAAT---TGAAGTAGATGGATGGACTCTTCACGCTAAAACAAATGT 170
BSNT_05617___ 177 AAACATGTCACTGACCGAAAAAGAATTTTATCAAAAAGTGCAACGTTT-A 225
|||||||||| .||| ||.||||||...||||||||.||||||| |
BPUM_3322___y 171 AAACATGTCA---TCCG---AACAATTTTCAAAAAAAGTGAAACGTTTCA 214
BSNT_05617___ 226 AAATCAGAGTATCGTCAATATGATTGGGTGATTGCACGG-----GAAG-A 269
||..|..|.|| ||.||.|||||.||| ||.| |||| |
BPUM_3322___y 215 AAGACGAACTA-CGACAGTATGAGTGG--------ACCGAAAAAGAAGAA 255
BSNT_05617___ 270 TAAAATGAT----AAAG-----GCAATTGGCACATATACTGACAAAAAAA 310
.||.||| | |||| |.|||| ||.|..||..||||||
BPUM_3322___y 256 GAACATG-TCACCAAAGTCACAGGAATT------TACAAAGATGAAAAAA 298
BSNT_05617___ 311 ATCGTAC---TTC-----TTTTAGACTGCAGCTTGTCACAACCCTCAAAA 352
||..||| .|| ||||| ||.||.|..|||..||.||
BPUM_3322___y 299 ATGATACAATATCGAAAATTTTA--------CTCGTGAAGACCGACACAA 340
BSNT_05617___ 353 AACACAATCCAACTTCGTATTTATTATATGAGCAAATGAGT-CTAGAGAC 401
||..|||||.||..||||||||||||||||||||||...|| ||.| ..|
BPUM_3322___y 341 AATCCAATCAAAAGTCGTATTTATTATATGAGCAAAAAGGTGCTCG-CCC 389
BSNT_05617___ 402 ACCGGATAGCTGGAATGATACATATGAACAGTTTGAACG----GGAGACA 447
||.|.|||.||||.|..||||||||||.|||||.|.||| |.|.|.|
BPUM_3322___y 390 ACTGAATACCTGGGAGCATACATATGATCAGTTCGTACGTCATGCAAAAA 439
BSNT_05617___ 448 CTTGGGATATTCCAAGAAAAAGTAGTTATTTTTACTTGTCTAAATGGTCA 497
|.|||||.|||||.|||.|.||.||||||||||||||..|||||||
BPUM_3322___y 440 ----GCATATTACAAGAGAAATTTGTAATTTTTACTTGTCTCGATGGTCA 485
BSNT_05617___ 498 CTTAGATGATAATATGAATATTGTTTTGCAAAAAAAAGC--AAATCAGTT 545
..||.|||.||..|||.||.||||||||||||||||||| |||| |||
BPUM_3322___y 486 TGTAAATGGTATGATGGATGTTGTTTTGCAAAAAAAAGCTGAAAT--GTT 533
BSNT_05617___ 546 ATTAAATGAATTTCAAGCAAGATCAGTAGAACATGTAGTTGAGCCAAATT 595
|..|||||||||||||||||.|.||||.||..||.|.||||||.|.||||
BPUM_3322___y 534 AGCAAATGAATTTCAAGCAAAACCAGTTGAGTATCTCGTTGAGTCTAATT 583
BSNT_05617___ 596 TCGTTTCTATTTCTGCGTTTACAGATGAGTGGGAAGAGTACATTATGACC 645
|.||.||..||||.||.|..||||||.||||||||.|||.|||||||||.
BPUM_3322___y 584 TTGTGTCGCTTTCCGCTTACACAGATAAGTGGGAACAGTTCATTATGACT 633
BSNT_05617___ 646 TCGAAACATAAAATGAATTTGCAAATTGCACTTAGAAGTGCAGAAATGGG 695
||.||..|||||||||||.|.||||||||..|.||||||.|.||||||..
BPUM_3322___y 634 TCAAATGATAAAATGAATGTTCAAATTGCCATCAGAAGTTCGGAAATGAA 683
BSNT_05617___ 696 CGGAAAACATACCGTTACGGTTGGCACACCAATCGTTACGACTGAATATT 745
||.|||.|||||..||||||||||||||||||||||.|||||||||||||
BPUM_3322___y 684 CGAAAATCATACGATTACGGTTGGCACACCAATCGTAACGACTGAATATT 733
BSNT_05617___ 746 AA 747
||
BPUM_3322___y 734 AA 735
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