Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05619 and BPUM_3324

See Amino acid alignment / Visit BSNT_05619 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_05619___ywmA.1.24716.seq
#    -bsequence dna-align/BPUM_3324___ywmA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05619___ywmA-BPUM_3324___ywmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05619___ywmA-BPUM_3324___ywmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05619___ywmA
# 2: BPUM_3324___ywmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 567
# Identity:     341/567 (60.1%)
# Similarity:   341/567 (60.1%)
# Gaps:         120/567 (21.2%)
# Score: 879.0
# 
#
#=======================================

BSNT_05619___      1 ATGGTATACTTTAT-TGGAAAGGAGCTG-GCAAATGTGAATCATTCTTTT     48
                     |||.||||||...| ||| ||||||||| .||.|| ||||..||||||||
BPUM_3324___y      1 ATGATATACTGCGTGTGG-AAGGAGCTGAACACAT-TGAAAGATTCTTTT     48

BSNT_05619___     49 TTTCAGCCTGAAAAGCAATATGGTGA-------GGA----------CCTG     81
                           ||||      |.|.||.|||       |||          ||| 
BPUM_3324___y     49 ------CCTG------ACTTTGTTGATTTGTACGGAGAACTGGTTCCCT-     85

BSNT_05619___     82 CCAATTTTTGATCAGGAATGGGAAGCAATTGCATTCTATTATGATTATAG    131
                      ||   ||||||||.||||||||.||.|||||.|||||.|.|||||||||
BPUM_3324___y     86 -CA---TTTGATCATGAATGGGAGGCCATTGCTTTCTACTTTGATTATAG    131

BSNT_05619___    132 ACAGTCACAGATTGAAGAACTGAATG-AATTGTGTCAGTTTTTTAACATT    180
                     ||||.|||||.|.|||||| |.|..| ||||||||||.|||..|||||||
BPUM_3324___y    132 ACAGACACAGCTAGAAGAA-TTAGCGCAATTGTGTCATTTTCATAACATT    180

BSNT_05619___    181 TCT----CTTAC-CTATACGAGAGAAAGCCTTGAAGAGCTTGAAAACCTT    225
                     |||    .|||| ||    ||| ||.|||||..|..||.|.|||...|||
BPUM_3324___y    181 TCTTTGGATTACTCT----GAG-GAGAGCCTGTATCAGTTAGAATCACTT    225

BSNT_05619___    226 TATTTT----CAAAGTATA-CAAG-AGCTTTTGCTTGCTGATTGGAATCT    269
                     ||.|||    ||   |.|| |||| |||   ||.||||.||.|||||..|
BPUM_3324___y    226 TACTTTGATGCA---TTTACCAAGCAGC---TGTTTGCCGAATGGAAAAT    269

BSNT_05619___    270 TCCTATTGAAGAATTCGAGAA--AATGATCAGTGTTTATCT--TATAGAT    315
                     .||.||.||.|.|||  ||||  .|||.|.|||||.|||.|  .|.||.|
BPUM_3324___y    270 GCCAATAGATGCATT--AGAAGCGATGTTGAGTGTGTATATGGGAGAGGT    317

BSNT_05619___    316 TG-----CGTGATTGCCCGCCATGAAGATGCTGAATGGGTTGTAAAACCT    360
                     ||     |||.||       |||..|||||||||.|||||.|||...|||
BPUM_3324___y    318 TGTCCTTCGTCAT-------CATTCAGATGCTGACTGGGTGGTACGGCCT    360

BSNT_05619___    361 TA---------TCCCTATAAAGACGGCGCTTATACACTTGGCTTTAGAAG    401
                     ||         |||..||.||         |||||.||.||.||..|..|
BPUM_3324___y    361 TATATGGACTCTCCACATCAA---------TATACGCTGGGGTTGCGCCG    401

BSNT_05619___    402 ACATCGCAAATCGTGGCATACAATGAATGC----CTGTGATGGTTTATA-    446
                     .||....|||.|||||||||    |.|.||    .||.||....||||| 
BPUM_3324___y    402 GCACAATAAAACGTGGCATA----GTACGCAGTTTTGCGAGCACTTATAT    447

BSNT_05619___    447 CCTGCGCCAAGAAGAGGAT----CGCCCGCTGCTGTCGCTGTTTGATT--    490
                     |.||    ||.||.|||||    ..||...|| |||||.|||...|.|  
BPUM_3324___y    448 CTTG----AAAAACAGGATTCTCATCCATATG-TGTCGATGTACCAATCG    492

BSNT_05619___    491 CTCTTGTTCGTTCATAA    507
                     |||.|||...||  |||
BPUM_3324___y    493 CTCATGTCACTT--TAA    507


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.