Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05620 and BPUM_3325

See Amino acid alignment / Visit BSNT_05620 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:13
# Commandline: needle
#    -asequence dna-align/BSNT_05620___atpC.1.24716.seq
#    -bsequence dna-align/BPUM_3325___atpC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05620___atpC-BPUM_3325___atpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05620___atpC-BPUM_3325___atpC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05620___atpC
# 2: BPUM_3325___atpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 412
# Identity:     301/412 (73.1%)
# Similarity:   301/412 (73.1%)
# Gaps:          29/412 ( 7.0%)
# Score: 1086.5
# 
#
#=======================================

BSNT_05620___      1 ATGAAGACCGTTAAAGTCAATATCGTTACTCCCGACGGCCCAGTATACGA     50
                     ||||||||||||.|||||||||||||||||||||||||||||||.||..|
BPUM_3325___a      1 ATGAAGACCGTTCAAGTCAATATCGTTACTCCCGACGGCCCAGTGTATCA     50

BSNT_05620___     51 TGCGGATATCGAAATGGTGAGTGTGAGAGCCGAAAGCGGCGATCTCGGTA    100
                     .||||||.|.||||||||.|||||.|||||.||||||||.||.||.||||
BPUM_3325___a     51 AGCGGATGTGGAAATGGTCAGTGTCAGAGCAGAAAGCGGTGAGCTTGGTA    100

BSNT_05620___    101 TTTTGCCAGGCCATATTCCAACCGTGGCTCCTCTTAAAATCGGCGCTGTC    150
                     ||||..|.|||||..||||||..||.|||||.||.||||||||.||.||.
BPUM_3325___a    101 TTTTAGCTGGCCACGTTCCAATGGTTGCTCCGCTAAAAATCGGTGCAGTT    150

BSNT_05620___    151 CGTCTGAAAAAAGACGGG--CAGACTGAAATGGTTGCCGTCAGCGGCGGA    198
                     || ||.||||.|.|..||  || ||||||.|||||||.||.||.||||||
BPUM_3325___a    151 CG-CTTAAAACATAGTGGATCA-ACTGAATTGGTTGCAGTAAGTGGCGGA    198

BSNT_05620___    199 TTTGTCGAAGTCCGTCCTGATCAGGTCACCATCCTTGCCCAGGCTGCCGA    248
                     |||||.|||||.||.|||||.||.||.|||||.|||||.|||||.||.||
BPUM_3325___a    199 TTTGTTGAAGTTCGCCCTGAACAAGTAACCATTCTTGCTCAGGCCGCTGA    248

BSNT_05620___    249 GACAGCGGAAGGCATC-GATAAA---------GAGCGCGCTGAAGCTGCA    288
                     .|          |||| ||||||         ||.||.||..||.|.||.
BPUM_3325___a    249 AA----------CATCAGATAAAGTTGATGTCGATCGTGCGAAATCAGCG    288

BSNT_05620___    289 CGCCAGCGGGCGCAGGAGCGTTTGAATTCTCAATCAG-ATGATACTGACA    337
                     ...|||||.||..|.||||.||||||    |.|.|.| ||||.|.|||..
BPUM_3325___a    289 AAACAGCGTGCTGAAGAGCATTTGAA----CCACCCGAATGAAAGTGATG    334

BSNT_05620___    338 TTCGTCGGGCTGAGCTTGCGTTACAGCGGGCTTTGAACAGATTGGATGTA    387
                     |.||.|||||.||.||.||.|||.|.|||||.||.|||.|.||..|||||
BPUM_3325___a    335 TACGCCGGGCGGAACTCGCATTAAAACGGGCGTTAAACCGTTTAAATGTA    384

BSNT_05620___    388 GCAGGGAAATAA    399
                     ||||||||||||
BPUM_3325___a    385 GCAGGGAAATAA    396


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