Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05622 and BPUM_3326

See Amino acid alignment / Visit BSNT_05622 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:13
# Commandline: needle
#    -asequence dna-align/BSNT_05622___atpD.1.24716.seq
#    -bsequence dna-align/BPUM_3326___atpD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05622___atpD-BPUM_3326___atpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05622___atpD-BPUM_3326___atpD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05622___atpD
# 2: BPUM_3326___atpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1423
# Identity:    1175/1423 (82.6%)
# Similarity:  1175/1423 (82.6%)
# Gaps:           2/1423 ( 0.1%)
# Score: 4871.0
# 
#
#=======================================

BSNT_05622___      1 ATGAAGAAAGGACGCGTTAGCCAGGTATTAGGACCGGTCGTCGACGTGCG     50
                     |||||.|.|||||||.|.||.|||.|..|.|||||.||.||.|||||.||
BPUM_3326___a      1 ATGAAAACAGGACGCATCAGTCAGATCATGGGACCAGTTGTAGACGTTCG     50

BSNT_05622___     51 TTTTGAAGACGGTCACTTGCCTGAAATTTATAATGCGATTAAAATTTCAC    100
                     |||||||||.||||||||||||||.||||||||||||||.|.|.||||.|
BPUM_3326___a     51 TTTTGAAGATGGTCACTTGCCTGAGATTTATAATGCGATCAGAGTTTCGC    100

BSNT_05622___    101 AGCCAGCTGCAAGTGAAAACGAAGTAGGTATTGATTTAACGCTTGAGGTC    150
                     |...|||.|.||||||||..|||||.|.|||.||.|||||..|.||.||.
BPUM_3326___a    101 ATAAAGCGGAAAGTGAAAGTGAAGTTGATATCGACTTAACTTTAGAAGTA    150

BSNT_05622___    151 GCTCTTCATTTAGGTGATGATACAGTCCGTACAATCGCAATGGCATCTAC    200
                     ||.||.|||||||||||.||||||||..|.||.|||||||||||.||.||
BPUM_3326___a    151 GCACTACATTTAGGTGACGATACAGTGAGAACCATCGCAATGGCTTCAAC    200

BSNT_05622___    201 GGATGGTGTTCAGCGCGGTATGGAAGCTGTAGATACAGGAGCGCCAATCT    250
                     .||||||||..||||.|||||||||||||||||....|||...|||||.|
BPUM_3326___a    201 AGATGGTGTGAAGCGTGGTATGGAAGCTGTAGACCTTGGAAAACCAATTT    250

BSNT_05622___    251 CAGTACCGGTTGGTGATGTAACACTTGGACGTGTATTTAACGTTCTCGGA    300
                     |||||||.||||||.|.||||||||||||||||||||.|||||.||.|||
BPUM_3326___a    251 CAGTACCAGTTGGTAACGTAACACTTGGACGTGTATTCAACGTACTGGGA    300

BSNT_05622___    301 GAAAATATTGATTTGAATGAGCCGGTTCCTGCGGATGCGAAAAAGGATCC    350
                     ||.||.||||||||..|||||||..||..||.|||.||..|||..|||||
BPUM_3326___a    301 GATAACATTGATTTAGATGAGCCACTTGGTGTGGAAGCTCAAAGAGATCC    350

BSNT_05622___    351 GATTCACAGACAGGCGCCTTCATTCGATCAGCTTTCAACAGAAGTTGAAA    400
                     .||.||||||||.|||||||||||.|||||.|||||.|||||||||||||
BPUM_3326___a    351 AATCCACAGACAAGCGCCTTCATTTGATCAACTTTCTACAGAAGTTGAAA    400

BSNT_05622___    401 TTCTTGAAACAGGTATTAAAGTTGTTGATTTGCTTGCTCCTTACATTAAG    450
                     ||||||||||.|||||||||||||||||..|.||||||||||||||.|||
BPUM_3326___a    401 TTCTTGAAACGGGTATTAAAGTTGTTGACCTTCTTGCTCCTTACATCAAG    450

BSNT_05622___    451 GGCGGTAAAATCGGATTGTTCGGTGGTGCCGGTGTAGGTAAAACCGTATT    500
                     |||||.||.|||||..|.||||||||.||.|||||||||||||||||..|
BPUM_3326___a    451 GGCGGAAAGATCGGTCTATTCGGTGGAGCTGGTGTAGGTAAAACCGTTCT    500

BSNT_05622___    501 AATCCAGGAATTAATCAACAACATCGCGCAAGAGCACGGCGGTATCTCTG    550
                     .||.||.||||||||||||||||||||.|||||.|||||||||||.||||
BPUM_3326___a    501 GATTCAAGAATTAATCAACAACATCGCACAAGAACACGGCGGTATTTCTG    550

BSNT_05622___    551 TATTCGCCGGCGTAGGAGAGCGTACTCGTGAAGGGAACGACCTTTTCTAC    600
                     |||||||.||.||.|||||||||||.||||||||.||||||||||.||||
BPUM_3326___a    551 TATTCGCTGGTGTTGGAGAGCGTACACGTGAAGGAAACGACCTTTACTAC    600

BSNT_05622___    601 GAAATGAGTGACTCTGGCGTAATCAACAAAACAGCCATGGTATTCGGACA    650
                     |||||||..||.||||||||.|||.|.||||||||||||||.||||||||
BPUM_3326___a    601 GAAATGAAAGATTCTGGCGTTATCGAAAAAACAGCCATGGTCTTCGGACA    650

BSNT_05622___    651 AATGAACGAGCCGCCGGGCGCACGTATGCGTGTTGCTTTGACAGGCCTTA    700
                     ||||||||||||.||.||.|||||||||||||||||..|.||.||..|.|
BPUM_3326___a    651 AATGAACGAGCCACCAGGTGCACGTATGCGTGTTGCCCTAACTGGTTTGA    700

BSNT_05622___    701 CAATGGCTGAGCACTTCCGTGATGTACAAGGACAGGACGTACTGTTCTTC    750
                     |||||||.|||||.||||||||||.||.|||.||.||||||.||||||||
BPUM_3326___a    701 CAATGGCAGAGCATTTCCGTGATGAACTAGGTCAAGACGTATTGTTCTTC    750

BSNT_05622___    751 ATCGATAACATTTTCCGTTTCACACAAGCGGGTTCAGAGGTTTCAGCCCT    800
                     |||||||||||.|..||.||.||||||||.|||||.||.||.||||||||
BPUM_3326___a    751 ATCGATAACATCTATCGCTTTACACAAGCAGGTTCTGAAGTATCAGCCCT    800

BSNT_05622___    801 TCTTGGCCGTATGCCTTCAGCGGTTGGTTATCAGCCGACGCTTGCAACTG    850
                     ||||||.|||||||||||||||||.||||||||||||||.||||||||.|
BPUM_3326___a    801 TCTTGGACGTATGCCTTCAGCGGTAGGTTATCAGCCGACACTTGCAACAG    850

BSNT_05622___    851 AGATGGGTCAGCTCCAAGAGCGTATCACGTCTACGAACGTTGGATCAGTT    900
                     |.|||||||||||.||||||||||||||||||||.|||||.|||||.|||
BPUM_3326___a    851 AAATGGGTCAGCTGCAAGAGCGTATCACGTCTACAAACGTAGGATCGGTT    900

BSNT_05622___    901 ACATCTATCCAGGCGATCTACGTGCCTGCCGATGACTACACTGACCCGGC    950
                     |||||.||.||.||||||||.||.|||||.|||||||||||.||.||.||
BPUM_3326___a    901 ACATCGATTCAAGCGATCTATGTACCTGCGGATGACTACACGGATCCAGC    950

BSNT_05622___    951 GCCGGCGACAACGTTCGCTCACTTGGATGCGACAACAAACCTTGAGCGTA   1000
                     .||.||.|||||||||||||||.|.|||||.||.||||||||||||||||
BPUM_3326___a    951 TCCAGCAACAACGTTCGCTCACCTTGATGCAACGACAAACCTTGAGCGTA   1000

BSNT_05622___   1001 AATTAACTGAAATGGGTATTTACCCTGCGGTTGATCCGTTGGCATCTACA   1050
                     |..|.||||||||||||||.|||||.|||||||||||..|.||.||.|||
BPUM_3326___a   1001 AGCTGACTGAAATGGGTATCTACCCAGCGGTTGATCCTCTTGCTTCAACA   1050

BSNT_05622___   1051 TCACGCGCCCTTGCTCCTGAAATTGTCGGAGAAGAGCATTATGCGGTTGC   1100
                     ||.||.||.|||||.|||||.||.||.||.||||||||.|||||..||||
BPUM_3326___a   1051 TCTCGTGCACTTGCACCTGAGATCGTTGGCGAAGAGCACTATGCCATTGC   1100

BSNT_05622___   1101 GCGTGAAGTACAGTCAACGCTTCAGCGTTACAAAGAGCTTCAAGATATCA   1150
                     |||||||||.|||..|||..|.||||||||.|||||.||.||||||||||
BPUM_3326___a   1101 GCGTGAAGTGCAGCAAACATTGCAGCGTTATAAAGAACTACAAGATATCA   1150

BSNT_05622___   1151 TTGCGATTCTCGGTATGGATGAACTAGGCGAGGAAGACAAACTTGTCGTT   1200
                     ||||.|||.|.||||||||||||.||...|||||.||.||.|||||.||.
BPUM_3326___a   1151 TTGCCATTTTAGGTATGGATGAATTATCAGAGGACGATAAGCTTGTGGTA   1200

BSNT_05622___   1201 CACCGCGCACGCCGTATCCAGTTCTTCCTTTCTCAGAACTTCCACGTGGC   1250
                     |||.|.||.||.|||.|.||.||||||||.|||||.|||||||||||.||
BPUM_3326___a   1201 CACAGAGCGCGTCGTGTTCAATTCTTCCTATCTCAAAACTTCCACGTAGC   1250

BSNT_05622___   1251 TGAACAGTTCACTGGACAAAAAGGTTCTTACGTGCCTGTAAAAGAGACGG   1300
                     .||.|||||||||||.||||||||||||||||||||..|.|||||.||.|
BPUM_3326___a   1251 AGAGCAGTTCACTGGCCAAAAAGGTTCTTACGTGCCATTGAAAGAAACTG   1300

BSNT_05622___   1301 TACAAGGCTTCAAAGAAATCTTAGCCGGTAAATACGACCATCTTCCAGAA   1350
                     |..||||||||||.|||||||||.|.||||||||.||.||.|||||||||
BPUM_3326___a   1301 TTAAAGGCTTCAAGGAAATCTTATCTGGTAAATATGATCACCTTCCAGAA   1350

BSNT_05622___   1351 GATGCGTTCCGTCTT-GTAGGCCGTATCGAAGAAGTTGTTGAGAAAGCAA   1399
                     |||||.||||| ||| ||.||.||.||.||||||||.|||||.|||||.|
BPUM_3326___a   1351 GATGCATTCCG-CTTAGTTGGACGCATTGAAGAAGTGGTTGAAAAAGCCA   1399

BSNT_05622___   1400 AAGAAATGGGTGTAGAAGTTTAA   1422
                     ||||.|||||||||||.|..|||
BPUM_3326___a   1400 AAGAGATGGGTGTAGAGGCCTAA   1422


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