Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05630 and BPUM_3332

See Amino acid alignment / Visit BSNT_05630 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:13
# Commandline: needle
#    -asequence dna-align/BSNT_05630___atpB.1.24716.seq
#    -bsequence dna-align/BPUM_3332___atpB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05630___atpB-BPUM_3332___atpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05630___atpB-BPUM_3332___atpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05630___atpB
# 2: BPUM_3332___atpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 744
# Identity:     499/744 (67.1%)
# Similarity:   499/744 (67.1%)
# Gaps:          81/744 (10.9%)
# Score: 1773.0
# 
#
#=======================================

BSNT_05630___      0 --------------------------------------------------      0
                                                                       
BPUM_3332___a      1 TTGGGTCACAGTTCAAAAACGACAGAATTTTTAGGGTTAACGTTCAACTT     50

BSNT_05630___      1 -------------ATGATTACTGTGGCGAGTGTGATTGTTTTATTGATTG     37
                                  ||||||||..|.||.|||.|.||.|||.|..|.||.|
BPUM_3332___a     51 ATCCAATGTTCTCATGATTACGATTGCTAGTATCATCGTTCTTCTCATAG    100

BSNT_05630___     38 CTATATTGACGACAAGAACG----CTTTCGATCCGTCCCGGAAAAGCCCA     83
                     |..|..||||.||    .||    ||.||.||.|||||...|||.||.||
BPUM_3332___a    101 CGGTGCTGACTAC----TCGTGTTCTGTCTATTCGTCCGACAAAGGCGCA    146

BSNT_05630___     84 GAACTTTATGGAATGGATTGTTGATTTCGTACGCAATATTATTGGCAGTA    133
                     ||||||.||||||||||||||||||||.||.||.|||||.||.||.|||.
BPUM_3332___a    147 GAACTTCATGGAATGGATTGTTGATTTTGTTCGAAATATCATAGGTAGTT    196

BSNT_05630___    134 CAATGGATTTAAAAACAGG-GGCTAACTTCTTGGCACTTGGTGTCACATT    182
                     |.|||||..|.|||||||| |.|..|.||| |.||.||.||.||.|||||
BPUM_3332___a    197 CGATGGACATGAAAACAGGAGCCCCATTTC-TAGCGCTAGGCGTTACATT    245

BSNT_05630___    183 GCTGATGTACATATTTGTGTCGAATATGCTGGGGCTGCCGTTCTCTATTA    232
                     .||.||||||||||||||.||.||.|||||.||.|||||.||.||.|||.
BPUM_3332___a    246 ACTCATGTACATATTTGTTTCAAACATGCTTGGACTGCCATTTTCGATTT    295

BSNT_05630___    233 CAATCGGACATGAGCTCTGGTGGAAGTCTCCGACAGCCGATCCTGCCATT    282
                     |..|||..||..|..|.||||||||.||.||.|||||.||.|||||.||.
BPUM_3332___a    296 CGGTCGATCACAACTTGTGGTGGAAATCACCAACAGCAGACCCTGCAATC    345

BSNT_05630___    283 ACATTAACGCTAGCCGTGATGGTTGTTGCTTTAACCCACTACTATGGTGT    332
                     |||.|.||.|||||.||.|||||..|.|..||.||.||.|||||||||||
BPUM_3332___a    346 ACAATGACACTAGCGGTTATGGTCATGGGCTTGACACATTACTATGGTGT    395

BSNT_05630___    333 GAAGATGAAAGGGCTCAAGGAATATTCCAAAGACTATTTAAGACCTGTTC    382
                     .|||...|||||..|||||||||||.|.||||||||.||.|||||..|||
BPUM_3332___a    396 CAAGGCAAAAGGAGTCAAGGAATATACGAAAGACTACTTTAGACCAATTC    445

BSNT_05630___    383 CATTCATGCTCCCGATGAAAATCATCGAAGAGTTTGCGAATACGCTGACT    432
                     ||.|..|..|.||..|||||||.||.|||||.|||||.||.|||.|.||.
BPUM_3332___a    446 CACTTTTAGTACCATTGAAAATTATTGAAGAATTTGCAAACACGTTAACA    495

BSNT_05630___    433 CTAGGTTTACGGCTGTATGGTAACATCTTCGCCGGTGAGATTCTTCTCGG    482
                     ||.|||||.||.||.|||||.|||||.||.||.||.|||||||||||.||
BPUM_3332___a    496 CTTGGTTTGCGTCTTTATGGAAACATTTTTGCTGGAGAGATTCTTCTTGG    545

BSNT_05630___    483 CCTGCTTGCGGGATTAGCGACAAGCCA----CTATTCGCAAAGCGTGGCT    528
                     ..|||||||.|||.|.||||    |||    |||||||||||.|.|.||.
BPUM_3332___a    546 TTTGCTTGCAGGACTTGCGA----CCAATTTCTATTCGCAAAACATTGCG    591

BSNT_05630___    529 CTCGGTCTTGTCGGTACAATCGGTGCCATTCTGCCGATGCTGGCATGGCA    578
                     ||.|||.|..|.||||||.|.||||||||..||||||||.|.|.||||||
BPUM_3332___a    592 CTTGGTATCATTGGTACATTAGGTGCCATCGTGCCGATGATTGTATGGCA    641

BSNT_05630___    579 AGCATTCAGTTTATTTATTGGTGCCATCCAGGCATTTATTTTTACAATGC    628
                     .|||||||||||.|||.|.||..|.|||||.||||||||.||.||.||||
BPUM_3332___a    642 GGCATTCAGTTTGTTTGTCGGAACAATCCAAGCATTTATCTTCACCATGC    691

BSNT_05630___    629 TGACGATGGTGTACATGTCTCATAAAATCAGTCATGATCATTAA    672
                     ||||.|||||||||||.|||||||||.||||..||||.||.|||
BPUM_3332___a    692 TGACAATGGTGTACATTTCTCATAAAGTCAGCGATGAACACTAA    735


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