Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05677 and BPUM_3361
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_05677___rpoE.1.24716.seq
# -bsequence dna-align/BPUM_3361.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05677___rpoE-BPUM_3361.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05677___rpoE-BPUM_3361.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05677___rpoE
# 2: BPUM_3361
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 566
# Identity: 372/566 (65.7%)
# Similarity: 372/566 (65.7%)
# Gaps: 85/566 (15.0%)
# Score: 1165.5
#
#
#=======================================
BSNT_05677___ 1 TTGGGTATCAAACAATATTCACAGGAAGAGCTAAAGGAAATGGCTTTAGT 50
|||.||.|.|||.||||.||||||||..||||.|||.|.|||.|||||||
BPUM_3361 1 TTGAGTTTGAAAGAATACTCACAGGAGCAGCTCAAGCACATGTCTTTAGT 50
BSNT_05677___ 51 TGAAATCGCTCACGAATTATTTGAAGA-ACA-TAAAAAACC-AGTTCCTT 97
||||.|.|||.|.||| ||||..||| ||| .||||.||| |.|.|.||
BPUM_3361 51 TGAACTTGCTTATGAA--ATTTTCAGAGACAGCAAAACACCGATTACGTT 98
BSNT_05677___ 98 TTCAGGAGCTTTTAAATGAAATCGCATC--TTTGCTCGGCGTGAAAAAAG 145
||| .|||.|..||.|||||||.| || |||.|..||..|..|||||.
BPUM_3361 99 TTC-CGAGTTAATAGATGAAATGG--TCCGTTTACAAGGAATTCAAAAAT 145
BSNT_05677___ 146 AAGAGCTTGGAGACCGCATCGCTCAATTTTATACAGATTTAAACATTGAC 195
..||.||||..||.|||.|.|||||||||||||||||.|||||.||.||.
BPUM_3361 146 CTGATCTTGATGATCGCCTTGCTCAATTTTATACAGACTTAAATATAGAT 195
BSNT_05677___ 196 GGCCGCTTCCTGGCGCTATCTGACCAGACGTGGGGGCTTCGCAGCTGGTA 245
||||||||..|..||.||..|||.||||..|||||.||||||||||||||
BPUM_3361 196 GGCCGCTTTATTTCGTTAGGTGATCAGAGATGGGGACTTCGCAGCTGGTA 245
BSNT_05677___ 246 TCC-GTATGATCAGCTTGATGAAGAAACTCAGCC------GACAGTCAAG 288
||| || ||||||..|.||.||||||..|||||| ||.|...||.
BPUM_3361 246 TCCAGT-TGATCAAATCGAAGAAGAAGTTCAGCCAGCTGTGAAAACAAAA 294
BSNT_05677___ 289 GCGAAAAAGAAAAAAGCGAAGAAAGCAGTC---GAAGAAGATCT----TG 331
|||||||||||||||.|.||...|||.||| |||||||| || ||
BPUM_3361 295 GCGAAAAAGAAAAAAACAAAAGCAGCTGTCGTTGAAGAAGA-CTTCGATG 343
BSNT_05677___ 332 ATCTTGACGAGTTTGAAGAG---ATCGA------CGAAGACGACCTTGAT 372
|..||||.||| |||||| ||||| .|||||.|||||||||
BPUM_3361 344 AAATTGAAGAG---GAAGAGGAAATCGAAGAGCTTGAAGAAGACCTTGAT 390
BSNT_05677___ 373 TTGGATGAAGTTGAGGAAGAACTCGATCTTGAAGCCGACGATTTTGA--- 419
.|.|.|||||..||.||.||.|||||.|| ||.|||.|||...||
BPUM_3361 391 CTTGTTGAAGACGACGATGATCTCGACCT---AGACGATGATGAGGAAAT 437
BSNT_05677___ 420 ---------------------CGATGAAGATCTTGACGAAGACGACGACG 448
|||.||||||..|||||||||.||.||||
BPUM_3361 438 CGAGGAAGAGATAGAAGACTTCGACGAAGATGATGACGAAGATGATGACG 487
BSNT_05677___ 449 ATCTT----GAGAT---CGAAGAAGATATTGTTGATGAAGATGATGAAGA 491
.||| ||.|| ||||||.|||.| .||.|||.||||.||
BPUM_3361 488 -GCTTAACAGAAATTGACGAAGACGATTT------AGACGATAATGAGGA 530
BSNT_05677___ 492 AGAGGAAATTAAATAG 507
||| |||||.|
BPUM_3361 531 AGA-GAAATAA----- 540
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