Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05684 and BPUM_3376
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_05684___uvsE.1.24716.seq
# -bsequence dna-align/BPUM_3376___uvsE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05684___uvsE-BPUM_3376___uvsE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05684___uvsE-BPUM_3376___uvsE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05684___uvsE
# 2: BPUM_3376___uvsE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1018
# Identity: 675/1018 (66.3%)
# Similarity: 675/1018 (66.3%)
# Gaps: 110/1018 (10.8%)
# Score: 1979.5
#
#
#=======================================
BSNT_05684___ 1 ATG-ATTTTCAGATTCGGGTTCGTTTCAAATGCGATGAGCCTT-TGGGAT 48
||| .||.|| ||||.||.|..||.||.|||||..|.| |||| |||||.
BPUM_3376___u 1 ATGCGTTATC-GATTTGGTTATGTATCCAATGCCGTCA-CCTTGTGGGAG 48
BSNT_05684___ 49 GCGTCTCCCGCTAAAACATTGACATTCGCGCGTTATTCA--AAGCTTTCA 96
||.|||||.||.||..|..||||.||.||..| ||.|| |||||.|||
BPUM_3376___u 49 GCTTCTCCTGCCAAGTCGCTGACCTTTGCAAG--ATACAGCAAGCTCTCA 96
BSNT_05684___ 97 AAGACTGAAAGAAAAGAAGCGCTTCTGACTGT--GACAAAAGCCAATTTG 144
|||...|||.|||||||.||| ||.|.|| || .|||||.||||||.|.
BPUM_3376___u 97 AAGGAAGAAGGAAAAGAGGCG-TTATTAC-GTACAACAAAGGCCAATCTC 144
BSNT_05684___ 145 CACAATACGATGAGAACCC-----TTCACTATATCATCGGACACGGCATC 189
...|||||..|.|||||.| |||.|.||.|| .||.|..|||
BPUM_3376___u 145 GTGAATACATTAAGAACGCTGTATTTCGCCATTTC-----TCATGATATC 189
BSNT_05684___ 190 CCTTTGTACCGTTTTTCCAGTTCGATTGTGCCGCTGGCTACGCATCCCGA 239
||..|.|||||||||||.||||||||.||.|||||.||.||.|||||.||
BPUM_3376___u 190 CCGCTTTACCGTTTTTCGAGTTCGATCGTTCCGCTTGCGACCCATCCTGA 239
BSNT_05684___ 240 CGTGATG-TGGGATTTTGTAACACCGTTTCAAAAAGAGTTTCGGGAGATT 288
.|| |.| |||||.|||||.|||||.||||||||.|||||||..||.|||
BPUM_3376___u 240 GGT-ACGCTGGGACTTTGTGACACCTTTTCAAAAGGAGTTTCTTGAAATT 288
BSNT_05684___ 289 GGAGAGCTTGTTAAAAC-CCATCAACTGCGAACAAGCTTTCATCCAAATC 337
||.|| .|||.|.|||| .|||...||.||....||||||||.||.||||
BPUM_3376___u 289 GGTGA-TTTGGTGAAACGGCATGGGCTTCGGGTGAGCTTTCACCCCAATC 337
BSNT_05684___ 338 AATTCACTCTGTTTACGAGCCCGAAGGAATCCGTCACAAAAAATGCGGTA 387
|||||||..|||||||.|||||.||....||..|||||.|||||||.||.
BPUM_3376___u 338 AATTCACCTTGTTTACTAGCCCTAAACCTTCAATCACAGAAAATGCCGTG 387
BSNT_05684___ 388 ACCGATATGGCGTATCACTACCGCATGCTTGAAGCCATGGGCATTGCT-- 435
|.|||.|||.||||.||.||.|..||||||||.||.||| ..|||
BPUM_3376___u 388 ATCGACATGACGTACCATTATCAAATGCTTGAGGCGATG----AAGCTCG 433
BSNT_05684___ 436 -----GATCGCTCCGTTATCAACATTCATATTGGCGGCGCTTACGGAAAT 480
||..||| .|||.|||||||||.||||||||||.|||||..||
BPUM_3376___u 434 AAAAGGAAGGCT---ATATGAACATTCATGTTGGCGGCGCGTACGGTGAT 480
BSNT_05684___ 481 AAAGACACCGCCACTGC-ACAATTTCATCAAAATATAAAACAGCTGCC-G 528
|||||| .||.|.||.| ||.||||.||.|||||||.||||||||.|| |
BPUM_3376___u 481 AAAGAC-TCGGCGCTTCAACGATTTGATGAAAATATCAAACAGCTTCCAG 529
BSNT_05684___ 529 CAGGAGATCAAAGAGCGGATGACACTTGAAAATGATGATAAAACATATAC 578
| |.|.|||||.|.|.|||||||.|||||.||||||||.|||||.|||||
BPUM_3376___u 530 C-GCATATCAAGGCGAGGATGACGCTTGAGAATGATGACAAAACGTATAC 578
BSNT_05684___ 579 AACGGAAGAAACGCTTCAGGTCTGTGAGCAGGAGGATGTTCCGTTTGTCT 628
..||..||||||||||...||.|||||..||.|.|.|.||||.|||||.|
BPUM_3376___u 579 GTCGTTAGAAACGCTTGGTGTATGTGAAAAGCATGGTATTCCCTTTGTGT 628
BSNT_05684___ 629 TTGACTTTCATCATTTTTAC---GCCAATCCAGACGATCACGCCGACCTG 675
||||.|..||||| |.|| ||||||..|||.||..|.||||..||
BPUM_3376___u 629 TTGATTACCATCA---TCACGTGGCCAATAAAGATGACAATGCCGCGCT- 674
BSNT_05684___ 676 AATGTAG-CA--CTGCCCCGCATGATCAAAACGTGG--GAGCGGATCGGC 720
||.|| || |||||..|.|||.||.|.||.||| |||| |..|||
BPUM_3376___u 675 --TGAAGACATCCTGCCAAGAATGTTCGACACTTGGACGAGC--ACTGGC 720
BSNT_05684___ 721 CTTCAGCCAAAGGTTCACTTGTCTTCCCCAAAATCGGAACAAGCGATACG 770
.|||.|||.||..||||.||.||.||.||.|||||.||..||||.|||||
BPUM_3376___u 721 ATTCCGCCTAAAATTCATTTATCCTCACCGAAATCAGAGAAAGCTATACG 770
BSNT_05684___ 771 CAGCCATGCCGAT--------TATGTTGACGCCAACTTTTTGCTGCCGCT 812
.||.|||||.||| ||||| .||||.|..|.|||||
BPUM_3376___u 771 TAGTCATGCAGATGGTGTAGATATGT--------CCTTTGTCTTACCGCT 812
BSNT_05684___ 813 GTTGGAACGCTTTAGGCAA------TGGGGAACG-AATATTGATTTCATG 855
||...|.||.||| || |||| || .||.|.|||||.|||
BPUM_3376___u 813 -TTTTCATGCATTA---AAACCGTGTGGG---CGTGATGTAGATTTTATG 855
BSNT_05684___ 856 ATTGAAGCAAAGCAGAAAGA-CAAGGCGCTTCTCCGCTTGATGGATGAAT 904
|||||.||.|||...||.|| ||| ||.||.|||||..||.|.||.|
BPUM_3376___u 856 ATTGAGGCGAAGTTAAAGGATCAA-GCCCTGCTCCGACTGGTCGAAG--- 901
BSNT_05684___ 905 TAAGCT-----CCATCCGCGGTGTCAAACGCCTCGGGGGCGGTG----CG 945
|||| |.||..|.||...|||.|| .|.||||||.| |.
BPUM_3376___u 902 --AGCTGTCTGCAATAAGAGGCAACAAGCG---AGTGGGCGGAGGAACCA 946
BSNT_05684___ 946 CTGCAATGGAAATCATAA 963
.|| |.||||||.||||.
BPUM_3376___u 947 TTG-AGTGGAAACCATAG 963
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