Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05691 and BPUM_3380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_05691___ywiE.1.24716.seq
# -bsequence dna-align/BPUM_3380___ywiE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05691___ywiE-BPUM_3380___ywiE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05691___ywiE-BPUM_3380___ywiE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05691___ywiE
# 2: BPUM_3380___ywiE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1591
# Identity: 1075/1591 (67.6%)
# Similarity: 1075/1591 (67.6%)
# Gaps: 176/1591 (11.1%)
# Score: 3434.5
#
#
#=======================================
BSNT_05691___ 1 ATGCTG---AAAAGGAGACTGGAATTTTTCTTTTTATATATGATGCTCAT 47
.|| |||||..|||||||||||||.|||||||||.|.|||.|..|
BPUM_3380___y 1 ---GTGAAAAAAAGACGACTGGAATTTTTATTTTTATATTTTATGATATT 47
BSNT_05691___ 48 CGGGGCATATGTCATTTGGTTTTTT-----CCGGTTTCCAGGC------- 85
||||||||||| ||||.|.|| |||| ||||| ||
BPUM_3380___y 48 CGGGGCATATG-----TGGTGTATTGGTGGCCGG-TTCCA-GCGTGGAGT 90
BSNT_05691___ 86 -TTGAGTTTTACGGAG-GATTGCTTTGCTATATAAGCATTATTTTGTTCA 133
||.||||.||||.|| |||| |||||...|||||||||.||.|
BPUM_3380___y 91 GTTCAGTTGTACGTAGCGATT-------TATATCGCCATTATTTTATTTA 133
BSNT_05691___ 134 GCATCTAT-TCATTAATTCTTGAAAACCGCACCTCGCAGCACACGCTGCT 182
|.||| || |||.|.||.||.||.|||||.||.||.||||||||.||..|
BPUM_3380___y 134 GTATC-ATCTCACTCATGCTAGAGAACCGTACATCACAGCACACACTCTT 182
BSNT_05691___ 183 ATGGATCCATATTCTTGTCTTTTTTCCAATCGTCGGCTACGTGTTTTATC 232
||||||..||.|.||..|||||||.||.|||.|.|||||..||||||||.
BPUM_3380___y 183 ATGGATGTATGTGCTCATCTTTTTCCCGATCATTGGCTATATGTTTTATT 232
BSNT_05691___ 233 TGTTTTCGGGACAGCTTTATGTAAAGGGAAAGCTGTTTAAGACAAAACGA 282
||||.|||||||||||.|||||.||.||..|..|.||.||..|||||.||
BPUM_3380___y 233 TGTTCTCGGGACAGCTCTATGTGAAAGGTCATTTATTCAAATCAAAAAGA 282
BSNT_05691___ 283 ATGTACAACAGGGAAAAGCT---CAGGA-AGCT--GTTTGACAAGGAGGA 326
|||||||||.|.|||||.|| |||.| |.|| |.|||| |||.|
BPUM_3380___y 283 ATGTACAACCGTGAAAAACTACGCAGAATATCTGAGCTTGA----GAGCA 328
BSNT_05691___ 327 AACGCCCGAAGTAACAGGGCTGAAGGACAATCAAGAGAGG--TTCTTTAC 374
| |||.||.|.|.||.|..|.|..||.|||| ||.|| ||.|||.|
BPUM_3380___y 329 A--GCCTGATGAATCAAGTTTAACCGAAAATC---AGCGGACTTTTTTTC 373
BSNT_05691___ 375 CTATTCCATCA-----------AGGCTGCCCATATGAATATCAATACGAA 413
|||.|| || |||| |||.||.|.||.||.||
BPUM_3380___y 374 --ATTACA-CAGAAAAGGCAACAGGC-------ATGCATGTGAACACAAA 413
BSNT_05691___ 414 AAGCAACATCAAAGTGCTGAAAAACGGCGAAGAAACCTT--CCCGGACAT 461
.||..|.||..|..|..|.|||||.||.||.||.||.|| |||| .||
BPUM_3380___y 414 TAGTGATATGGACATTTTAAAAAATGGGGAGGAGACGTTTCCCCG--TAT 461
BSNT_05691___ 462 TTTCAAAGCGATGAGAAAAGCTGAATCTTACATACATATTGAATACTACA 511
|||..|||.|.|.|.|||.||..||||.|.|||.|||||.||||||||||
BPUM_3380___y 462 TTTTGAAGAGTTAAAAAAGGCAAAATCGTTCATCCATATAGAATACTACA 511
BSNT_05691___ 512 TGTTTAAATCAGACATGCTCGGACGCGGCATGATGGACATTATGATGGAG 561
||||.||||||||..|.||.||||.|.|.||||||||.|||.||||.||.
BPUM_3380___y 512 TGTTCAAATCAGATTTCCTTGGACACCGGATGATGGAGATTCTGATAGAA 561
BSNT_05691___ 562 AAAG----CGCGCCAGGGTGTCGAGGTGAGGTTTTTATACGATGCGGCAG 607
|||| .| |.||..|.|||||..|.||..|.||.||||||||.|
BPUM_3380___y 562 AAAGTAAAAG----AAGGGATAGAGGTTCGCTTCATCTATGATGCGGCTG 607
BSNT_05691___ 608 GAAGCATGAAGCTGG-----CAAGAAGAGATATTATGAGAA----TGAAA 648
|.||||| |.| |..|||.|||||||| || ||||.
BPUM_3380___y 608 GCAGCAT-----TCGCTTCTCTCGAAAAGATATTA----AACGCTTGAAG 648
BSNT_05691___ 649 CAAGCGGGGGTGGACATCGT--CCCGTTTTCT-CCGCTGAAATACGGGTT 695
||.|||||.|| ||..|| |.|..||||| ||..|.|||||.||.||
BPUM_3380___y 649 CAGGCGGGAGT---CAAGGTTGCTCCATTTCTGCCTTTAAAATATGGTTT 695
BSNT_05691___ 696 TTTCAACCAGAAGCTGAATTTCAGAAATCACCGGAAAATCGTGATCATCG 745
.||.||.||.||..|.||||||.|.||||||||.|||||.||||||||.|
BPUM_3380___y 696 CTTTAATCAAAAATTCAATTTCCGTAATCACCGAAAAATTGTGATCATTG 745
BSNT_05691___ 746 ATGGGAAAACCGGTTTTGTGGGCGGATTAAATGTTGGGAAGGAATATATC 795
||||||||||.||.|||||.|||||.||||||||.||.||.||||||.||
BPUM_3380___y 746 ATGGGAAAACTGGATTTGTCGGCGGGTTAAATGTCGGAAAAGAATATGTC 795
BSNT_05691___ 796 AGCAGAGATCCGTACATCGGATTTTGGAGAGATACACACCTGCG--GCTT 843
.|..|.|||....|||||||.||||||.|.|||||.|| |.|| |.|.
BPUM_3380___y 796 GGACGTGATGAAAACATCGGTTTTTGGCGTGATACGCA--TACGATGTTA 843
BSNT_05691___ 844 GAGGGGGAAATTGTGCAAACGCTCCACGCTATCTTTATGCTGGATTGGGA 893
.||||.||...|||.|||||.||.|||.||.|.||||||||.||.|||||
BPUM_3380___y 844 AAGGGCGAGGCTGTCCAAACCCTTCACTCTGTTTTTATGCTCGACTGGGA 893
BSNT_05691___ 894 ATATGTCTCCAATGAAGTGCTAATTGATCAAGAGGAGTACAATACCCCGG 943
.|||||.||..|||||||..|||||||..|...|.||||..||||.||..
BPUM_3380___y 894 GTATGTATCAGATGAAGTATTAATTGACGATCCGAAGTATCATACGCCTC 943
BSNT_05691___ 944 TTCCCGT----GGAAGGAGGA-GGCATTTATCAAATTGTCGCAACAGGCC 988
.|||.|| ||| ||||| |.||| |||..||||..||||.||.|
BPUM_3380___y 944 ATCCTGTGACGGGA--GAGGATGTCAT---TCAGGTTGTACCAACTGGAC 988
BSNT_05691___ 989 CTGACATGAAGGAAAGCATGAGCGACCTTTATTATGAAATGATTTCTTCA 1038
||||.|||||.|||||.|||||.|| ||||| |||||....|||
BPUM_3380___y 989 CTGATATGAAAGAAAGTATGAGTGA--TTTAT------ATGATGCACTCA 1030
BSNT_05691___ 1039 GCGCA-----GAAATCAA----TATGGATCGCCACGCCCTATTTTGTCCC 1079
.|.|| |||| ||| |.|||||.||.||.||.|||||||||||
BPUM_3380___y 1031 TCTCAAATGCGAAA-CAATTTGTCTGGATTGCGACACCTTATTTTGTCCC 1079
BSNT_05691___ 1080 CAATGAATCCATTCGCACGGCGCTAAAAGCAGCGGCGACAAAGGGGGTAG 1129
.|||||||||||.||.|||||..|.|||...||.||.||||..||.||.|
BPUM_3380___y 1080 GAATGAATCCATACGTACGGCATTGAAAATTGCTGCAACAAGAGGAGTGG 1129
BSNT_05691___ 1130 AGGTAAGGGTTATGGTGCCGGAGAAGAACGACAGCTTTTTGACCCAATAC 1179
|.||..||||.|||||.|||||||..||.|||.|||||.|.||.||||||
BPUM_3380___y 1130 ATGTTCGGGTGATGGTTCCGGAGATCAATGACGGCTTTCTCACTCAATAC 1179
BSNT_05691___ 1180 GCGTCGAGGTCCTATTTCCCGGAGCTGCTCCTTGAGGGCATTGAAGTGTA 1229
||..|.|||||||||||..|.|||||.||....|||||.||..|.|||||
BPUM_3380___y 1180 GCCACAAGGTCCTATTTTTCTGAGCTCCTAAAAGAGGGTATCAAGGTGTA 1229
BSNT_05691___ 1230 CTC-CTACCAAAAAGGCTTCATGCATCAAAAAGTCATGATCATTGATGGC 1278
|| |||.||||||||||||||||||||||||||.|||.||...|||||.
BPUM_3380___y 1230 -TCACTATCAAAAAGGCTTCATGCATCAAAAAGTGATGGTCGCAGATGGA 1278
BSNT_05691___ 1279 GATCTCGCCTCCGTCGGTACCGCGAATATGGACATGCGCAGCTTTCAGCT 1328
||.||.|||||.|||||.|||||.|||.||||.|||.|.|||||||||||
BPUM_3380___y 1279 GAACTTGCCTCTGTCGGCACCGCAAATGTGGATATGAGAAGCTTTCAGCT 1328
BSNT_05691___ 1329 CAACTTTGAAGTGAATGTGTTCTTCACGGATGCCGAAGCGATCCGAA--- 1375
|||.|||||.||.|||| ||||.||| |||| ||||
BPUM_3380___y 1329 CAATTTTGAGGTCAATG---TCTTTACG---GCCG--------CGAAAAA 1364
BSNT_05691___ 1376 --CCCTTGA---------GGTCCATTTTGAAGAGGATATGCAGGAAAGTG 1414
||.|||| ||.|||||.||||||.||||||.|.|||.|||
BPUM_3380___y 1365 GCCCATTGAGCAGCTGATGGCCCATTATGAAGAAGATATGAAAGAATGTG 1414
BSNT_05691___ 1415 A--AAAGCTCAGCCCTGTCGGCTTTTATAAAAGAGGCGTGGCTGACCGGA 1462
| ||| |..|.|||||....|||||||||||||||.|....||.||..
BPUM_3380___y 1415 AGCAAA--TGGGACCTGTTCATTTTTATAAAAGAGGCTTAAAAGAGCGAT 1462
BSNT_05691___ 1463 CAAAAGAGTCATTTGCCCGCCTGTTTTCAAGTGTTCTGTAA 1503
.|||.||.||||||||.||..|||||||..|||||.|.|||
BPUM_3380___y 1463 TAAAGGAATCATTTGCTCGGTTGTTTTCTGGTGTTTTATAA 1503
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