Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05750 and BPUM_3393
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_05750___ywgA.1.24716.seq
# -bsequence dna-align/BPUM_3393___ywgA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05750___ywgA-BPUM_3393___ywgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05750___ywgA-BPUM_3393___ywgA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05750___ywgA
# 2: BPUM_3393___ywgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 522
# Identity: 381/522 (73.0%)
# Similarity: 381/522 (73.0%)
# Gaps: 42/522 ( 8.0%)
# Score: 1328.5
#
#
#=======================================
BSNT_05750___ 1 TTGTTGAAAGAACATGCAAAACTGATGAAGGTGTTCTCGGATTCTGGAGA 50
|||||||||||.||||||||..||||||||||.|||||.||.|||||.||
BPUM_3393___y 1 TTGTTGAAAGAGCATGCAAAGTTGATGAAGGTATTCTCTGAATCTGGGGA 50
BSNT_05750___ 51 AATCATCGGGCGAAAGAAGCTGCAGAAAATGATTTATATCGCCAAGAAAA 100
||||.|.||.||.|||||||||||.||.||||||||.||.||.||.||..
BPUM_3393___y 51 AATCGTTGGACGGAAGAAGCTGCAAAAGATGATTTACATAGCAAAAAAGC 100
BSNT_05750___ 101 TGCAGTTTCCTTTCTATGAGAAATATGATTTTCACTTTTATGGACCGTAT 150
|..|.||.|||||.||.||||||||.|||||||||||||||||.||.|||
BPUM_3393___y 101 TAGATTTGCCTTTTTACGAGAAATACGATTTTCACTTTTATGGCCCCTAT 150
BSNT_05750___ 151 TCGGAGGAACTGACGCTCCAG-ATTGAAGAGCTGTGCAACCTTGGATTTC 199
||.|||||..||||||| ||| |||||||||.||||||||||||||||..
BPUM_3393___y 151 TCAGAGGAGTTGACGCT-CAGAATTGAAGAGTTGTGCAACCTTGGATTCT 199
BSNT_05750___ 200 TGCATGAGGTGAAGGAAAAAAAGGGCGGCTACTTTCAATACCGGTATTCG 249
||.|.||..|||||||||||||.|||||.||||.|||.||.||.||||||
BPUM_3393___y 200 TGGACGAAATGAAGGAAAAAAAAGGCGGATACTATCAGTATCGTTATTCG 249
BSNT_05750___ 250 CTGACTGAGACAGGCTCCGCA----TTTTTAGACCA-TGCTGATCTGGAC 294
|||||.||.|..|| |.| |||.|.||.|| ||| ||..|||||
BPUM_3393___y 250 CTGACGGACAATGG----GAAAGAGTTTCTCGATCAGTGC-GAAGTGGAC 294
BSNT_05750___ 295 ATGCCGGATATGAAAG-GCTATATCGA-----CAG-TGTAAAC-AGCCGT 336
|||||.||..|.|||| ||| || ||| || ||| |||.|
BPUM_3393___y 295 ATGCCTGACCTCAAAGTGCT-----GACGCAGCAGATG--AACGAGCAG- 336
BSNT_05750___ 337 TCATCACGGTTTTTAGAGCTGGTTTCCACGATCCTTTACTTTGACG---G 383
||.||.||.||..|||||||.||.||.||.||..|.||||||||.| .
BPUM_3393___y 337 TCGTCTCGTTTCCTAGAGCTCGTCTCTACAATTTTATACTTTGATGATCT 386
BSNT_05750___ 384 GCTTGAGGATGAGGAAAAGAAAGAAAAAGTCTTTACCATCAAAAGCAAGC 433
||..||.|||||||.|||| |||||||||||.|||||.||||||||||
BPUM_3393___y 387 GCCAGAAGATGAGGTAAAG---GAAAAAGTCTTCACCATTAAAAGCAAGC 433
BSNT_05750___ 434 AAAAATATACAAATGAAGAATATGACGAAGCGCTTCAATACATAGAGGAA 483
|....|||||..|.|||||||.|||.||.||.|||...||.||.||..||
BPUM_3393___y 434 AGCGCTATACGGACGAAGAATTTGAGGATGCTCTTGCTTATATTGATCAA 483
BSNT_05750___ 484 CTGAAGCAGATTTGTTAA---- 501
.||||| ||.||| ||
BPUM_3393___y 484 TTGAAG--GAATTG--AACTAG 501
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