Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05787 and BPUM_3426
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:21
# Commandline: needle
# -asequence dna-align/BSNT_05787___spsL.1.24716.seq
# -bsequence dna-align/BPUM_3426___spsL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05787___spsL-BPUM_3426___spsL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05787___spsL-BPUM_3426___spsL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05787___spsL
# 2: BPUM_3426___spsL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 471
# Identity: 346/471 (73.5%)
# Similarity: 346/471 (73.5%)
# Gaps: 30/471 ( 6.4%)
# Score: 1202.0
#
#
#=======================================
BSNT_05787___ 1 GTGATTGATGGAGT-CAAGGTGAAAAAATTGATGAAGCATAGCGATGACA 49
.||||||||||.|| ||| ..|||||||.|.|||||.|||.|.|||||..
BPUM_3426___s 1 ATGATTGATGGTGTACAA-ACGAAAAAACTCATGAAACATTGTGATGATC 49
BSNT_05787___ 50 GAGGCTTTTTTGCTGAGCTGGTCCGGGACGATGAGAATCTCC-TTG---- 94
|.|||||||||||.|||||..|.||.||.|||||| || |||
BPUM_3426___s 50 GCGGCTTTTTTGCAGAGCTCATTCGAGATGATGAG-----CCATTGCTGA 94
BSNT_05787___ 95 AGCATTTTGGGCAGGCCTCTTGGTCGAAAAGCTATCCGGGTGTGATTAAG 144
|.|.||||||||||||.||.|||||||||||||.|||.||.|||||.||.
BPUM_3426___s 95 AACGTTTTGGGCAGGCATCGTGGTCGAAAAGCTTTCCAGGAGTGATCAAA 144
BSNT_05787___ 145 GCATTTCATTATCATGAGAAGCAGGATGATCTCTGGTTCTTCCCAACCGG 194
||.||||||||||||||.|||||.|||||..|.|||||.||||||...||
BPUM_3426___s 145 GCCTTTCATTATCATGAAAAGCAAGATGACGTTTGGTTTTTCCCAGTAGG 194
BSNT_05787___ 195 CCACGCTCAGGTTGTCCTATACGATCTTCGAGAGGATTCAAAGACAAAAG 244
.||.||||||||.||..||||||||.|.||.|||||.||....|| |||
BPUM_3426___s 195 TCATGCTCAGGTCGTTTTATACGATTTGCGTGAGGACTCTCCTAC--AAG 242
BSNT_05787___ 245 GAG--AAACGGACGTCTATTATATGGGCGAAGACAATCCGATGCTG---- 288
||| ||||.||.||.|||||||||||.|||||.|||||.||||||
BPUM_3426___s 243 GAGGCAAACCGATGTGTATTATATGGGGGAAGATAATCCAATGCTGCTCC 292
BSNT_05787___ 289 TTATTAATCCCCAAAGGG-GTGGCTCACGGATATAGAGTGCTGGGAGAGA 337
|.||| |||||||| ||.||.||.||.||..|.||.||.||.||||
BPUM_3426___s 293 TCATT-----CCAAAGGGTGTCGCGCATGGCTACCGGGTACTAGGGGAGA 337
BSNT_05787___ 338 CGCCGCTGAC-AATTATCTATTTTACCACCATGTCGTATAACCCGGATCA 386
||||||| || ||||.|||||||.||.||....||.|||.|||||.|..|
BPUM_3426___s 338 CGCCGCT-ACAAATTGTCTATTTCACGACAGAATCCTATGACCCGAAAAA 386
BSNT_05787___ 387 GCCTGATGAAAAAAGAATTCCGTGGAATGATGAGACGATCGGTTTTAACT 436
.||.||||||||.|||||..|.||||||||.||.||.|||||.|||.|.|
BPUM_3426___s 387 CCCAGATGAAAAGAGAATCGCTTGGAATGACGAAACAATCGGATTTGATT 436
BSNT_05787___ 437 GGAACACTGA-ATTCAGATAA 456
||.|.|| || |||.|.||||
BPUM_3426___s 437 GGGAAAC-GACATTTAAATAA 456
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