Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05789 and BPUM_3427

See Amino acid alignment / Visit BSNT_05789 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:22
# Commandline: needle
#    -asequence dna-align/BSNT_05789___spsK.1.24716.seq
#    -bsequence dna-align/BPUM_3427___spsK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05789___spsK-BPUM_3427___spsK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05789___spsK-BPUM_3427___spsK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05789___spsK
# 2: BPUM_3427___spsK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 910
# Identity:     580/910 (63.7%)
# Similarity:   580/910 (63.7%)
# Gaps:         113/910 (12.4%)
# Score: 1616.0
# 
#
#=======================================

BSNT_05789___      1 TTGACAAAGGTATTGGTGACTGGGGCGGGAGGACAGCTTGGCTTGGAACT     50
                        |..||.||.||..|.||.||.||.||.||.||.||.||....|||.|
BPUM_3427___s      1 ---ATGAAAGTTTTAATCACCGGTGCAGGCGGGCAACTAGGGAAAGAATT     47

BSNT_05789___     51 ATGCCGCCAGCTGAAGCAAGCCGGATATGA-GGTCATTGCGTTAACAAAG     99
                     ..||.|.|||||.||| .||...||.||.| .||||||||.|||||.|.|
BPUM_3427___s     48 GAGCAGACAGCTCAAG-GAGAAAGACATCACCGTCATTGCCTTAACGAGG     96

BSNT_05789___    100 AAGATGATGAACATTGCTGACCAGCGCTCAGTACGGCATTCGTTTGGCCA    149
                     |..|||.|.||.||.||.|||||||...||||..|.||..|..|..|.||
BPUM_3427___s     97 AGCATGCTCAATATCGCAGACCAGCAAGCAGTCAGACACGCAATGAGACA    146

BSNT_05789___    150 TTATCAGCCGGATATCGTGGTCAATAGC-GCCGCGTTTACGTCGGTTGAT    198
                     ||.||..||..||||.||.||||.| || ||.||.|.|||.||.||.|||
BPUM_3427___s    147 TTTTCGACCTCATATTGTTGTCAGT-GCAGCAGCATATACCTCTGTAGAT    195

BSNT_05789___    199 CAATGCGAGAAAGAGCTTGATAAAGCGTA-CTTGGTTAACGGAATCGGCG    247
                     ||.||.||.|.|||....||.||.||||| ||| |||||.||.||.||||
BPUM_3427___s    196 CAGTGTGAAACAGAAACGGAAAAGGCGTATCTT-GTTAATGGCATTGGCG    244

BSNT_05789___    248 CTTATTATACAGCGCTTGAGTC----AACCCGCATCGGTGCTCAATATGT    293
                     |.||.||.||||||||.|||.|    ||    |||.||.||| .||.|||
BPUM_3427___s    245 CCTACTACACAGCGCTGGAGGCTAAGAA----CATAGGGGCT-GATGTGT    289

BSNT_05789___    294 T-CATATCAGCACGGACTATGTATTCAATGGGAAAGGA-ACCCAGCCATA    341
                     | |||.||||.||.||.|||||.||..|.|||.|||.| ||.| |||.||
BPUM_3427___s    290 TACATGTCAGTACAGATTATGTGTTTGACGGGCAAGCAGACAC-GCCTTA    338

BSNT_05789___    342 TAGGGAAGACGATCCCC---TCGATCCGAAAACCATTTATGGCAAAAGCA    388
                     .|   |||.||||.|.|   ..|||||..|||||||||||||.|||||.|
BPUM_3427___s    339 CA---AAGTCGATGCACAAGCAGATCCTCAAACCATTTATGGAAAAAGTA    385

BSNT_05789___    389 AAAGGCTTGGAGAAGAACTGATAAGATTA-----------ACGA--CAAA    425
                     |||.||||||.||.|||.||||    |.|           ||||  .|||
BPUM_3427___s    386 AAAAGCTTGGTGAGGAATTGAT----TCATCTTGTATCAGACGAAGTAAA    431

BSNT_05789___    426 AGACAGCACGATCATCAGAACATCGTGGGTGTACGGACATG-GCGGCAGT    474
                     |         ||||||.|.|||||||||.|.|||||||||| |.|.|| |
BPUM_3427___s    432 A---------ATCATCCGTACATCGTGGCTATACGGACATGAGGGACA-T    471

BSNT_05789___    475 AATTTCGTTGAA-ACCATGCTGAAGTTTGCTGAAACGAAA----CAA--G    517
                     |||||.| |||| |||||.||...|.|.||.||||| |||    |||  |
BPUM_3427___s    472 AATTTTG-TGAATACCATCCTTCGGCTCGCAGAAAC-AAAGGATCAATTG    519

BSNT_05789___    518 AGCTTCGGGTTGTCAGCGATCAAATTGGTTCGCCGACTTATACGAAGGAT    567
                     .||.||     ||.|.|||.|||||.||.||.||.||||||||.||||||
BPUM_3427___s    520 CGCATC-----GTGAACGACCAAATAGGCTCACCTACTTATACAAAGGAT    564

BSNT_05789___    568 TTAGCAGAAGCGGTCATCAAGCTGTT-------CAGCCATCCGCCGGGCA    610
                     .|.|||||.||..||||..|..||||       |||.||       ||.|
BPUM_3427___s    565 GTCGCAGAGGCCATCATTCATTTGTTTGATCAACAGGCA-------GGAA    607

BSNT_05789___    611 TCTATCATGTCAGCAATTCAGGCATATGCAG---CTGGTATGAGTTTGCG    657
                     |.|||||||||||.||  |||..|.| ||.|   |||||.|||.||||||
BPUM_3427___s    608 TTTATCATGTCAGTAA--CAGAGAGA-GCTGTTCCTGGTTTGACTTTGCG    654

BSNT_05789___    658 ATGGCAATTATGGAAGAAAGCGGGCTGGAAACAGCCATTTTGCCTGTAAC    707
                     ...|.||||.|||.|.|||||||.|||...||..|||||..|||..|..|
BPUM_3427___s    655 TCAGAAATTGTGGCAAAAAGCGGCCTGTCTACGACCATTGAGCCCATTTC    704

BSNT_05789___    708 GACAGAGGAATACGGGAACAAAACGCCCCGTCCGGCATACTCTGTGCTGA    757
                     .||.||.||.||.||...|.|||||||.||.||.||.||.||||| .|.|
BPUM_3427___s    705 CACGGAAGAGTATGGATTCCAAACGCCTCGCCCAGCCTATTCTGT-ATTA    753

BSNT_05789___    758 G-CCATCGGGCCATTGAAG----AAGCCGGCATCCGCCCCCGCCACTGGC    802
                     | ||.||..||.|||||||    |.|..||||.|||    .|.||.|||.
BPUM_3427___s    754 GACCTTCAAGCGATTGAAGCTACAGGTTGGCAGCCG----AGACATTGGA    799

BSNT_05789___    803 GGGAAGCGTTACGAGAGTATTTGCAG---GAAAGGAG-------CAGTAC    842
                     .|||.|||.|.|..||.|||||||||   |||.||||       |||.| 
BPUM_3427___s    800 AGGATGCGCTTCATGAATATTTGCAGAAAGAAGGGAGATGGCATCAGCA-    848

BSNT_05789___    843 GTGTGATTGA    852
                        |||||||
BPUM_3427___s    849 ---TGATTGA    855


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