Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05794 and BPUM_3432
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_05794.1.24716.seq
# -bsequence dna-align/BPUM_3432___spsE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05794-BPUM_3432___spsE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05794-BPUM_3432___spsE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05794
# 2: BPUM_3432___spsE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1209
# Identity: 658/1209 (54.4%)
# Similarity: 658/1209 (54.4%)
# Gaps: 345/1209 (28.5%)
# Score: 1924.5
#
#
#=======================================
BSNT_05794 0 -------------------------------------------------- 0
BPUM_3432___s 1 ATGGCGCATTTCTACATTGGAGATCGCAAAGTGGGGGATGGTGCGCCTGT 50
BSNT_05794 0 -------------------------------------------------- 0
BPUM_3432___s 51 CTTTATCATTGCAGAGGCAGGCATTAACCATGATGGGAAGCTGGATCAGG 100
BSNT_05794 0 -------------------------------------------------- 0
BPUM_3432___s 101 CGCTTGCTTTAATTGATGTGGCAAAAGAAGCAGGTGCCGATGCAGTGAAG 150
BSNT_05794 1 ------------------------ATGTACCAGAAAGATCCTGGTTTGTA 26
|||||.||.||.||.||.|||||.||
BPUM_3432___s 151 TTTCAAATGTTTCAAGCTGATCGGATGTATCAAAAGGAACCGGGTTTATA 200
BSNT_05794 27 CAAGACGGCAGCGGGCAAGGACGTCTCTATTTTTTCTTTGGTTCAATCTA 76
|.|.||.||...|||..|.||.||.||.||||||||.||.||..||...|
BPUM_3432___s 201 CGAAACAGCCAAGGGAGAAGAGGTGTCCATTTTTTCCTTAGTCGAACAAA 250
BSNT_05794 77 TGGAAATGCCTGCTGAGTGGATTTTACCGCTATTGGATT-----ACTGCC 121
||||..||||..|.||.||| ||||||.|.|| ||| .||| |
BPUM_3432___s 251 TGGAGCTGCCGCCAGAATGG---TTACCGGTGTT--ATTGTCACGCTG-C 294
BSNT_05794 122 GCG--AAAAGCAGG-TGATCTTTTTAAGTACGGTATGTGACGAGGGGTCA 168
||| ||||| || ||.||||||||||.||.||.||||||||||..||.
BPUM_3432___s 295 GCGGAAAAAG--GGCTGCTCTTTTTAAGCACAGTGTGTGACGAGGAATCT 342
BSNT_05794 169 GCTGATCTGCTTCAGTCTACCTCG--CCGAGCGCTTTTAAAATCGCATCC 216
||.||| |..||.|.||.|.| || |||...|||||||||.|.||||||
BPUM_3432___s 343 GCGGAT-TTATTAAATCAAAC-CGATCCGCCAGCTTTTAAACTGGCATCC 390
BSNT_05794 217 TATGAAATTAACCATCTCCCGCTGCTCAAATATGTCGCCCGGC------T 260
|||||.||.||.|||.|.| |||...||.|||.|.|.|| |
BPUM_3432___s 391 TATGAGATCAATCATTTGC-----CTCTTTTACGTCACACAGCTTCTTTT 435
BSNT_05794 261 GAACAGGCCGATGATTTTCTCGACAGCCGGAGCTGAAATCTCTGATGTTC 310
.|| |.|||.||.||||||||.||.|||||.||....||..|.|||||||
BPUM_3432___s 436 CAA-AAGCCCATCATTTTCTCAACTGCCGGCGCCACTATTGCAGATGTTC 484
BSNT_05794 311 ACGAAGCTT----GGCGCACCATCAGGGCA---GAGGGAAACAATCAAAT 353
|.|||||.| |||| ||.| || |||..||||.||||..|
BPUM_3432___s 485 ATGAAGCATATGAGGCG----ATTA---CAAGCGAGCAAAACGATCAGGT 527
BSNT_05794 354 TGCCATAATGCATTGTGTGGCGAAATACCCAGCACCGCCGGAGTACAGC- 402
.|||||.||||||||.|||||.||.||.|||||||| ||.|||
BPUM_3432___s 528 CGCCATCATGCATTGCGTGGCAAAGTATCCAGCACC-------TAGAGCT 570
BSNT_05794 403 ------AACCTCAGCGTCAT----TCCGATGCTT-GCCGCCGCTTTTCCT 441
||.|| ||.| |||.|..||| |||.|||||||||||
BPUM_3432___s 571 TTCACGAATCT-----TCGTGTGCTCCAAACCTTAGCCTCCGCTTTTCCT 615
BSNT_05794 442 GAGGCAGTAATCGGCTTCTCCGATCATAGCGAGCATCCGACAGAAGCGCC 491
|||||.||.||||||||.||.||||||||.||.|||||.||.|||||.||
BPUM_3432___s 616 GAGGCGGTCATCGGCTTTTCTGATCATAGTGAACATCCTACTGAAGCTCC 665
BSNT_05794 492 ATG-TGCCGCGGTTCGGCTCGGAGCAAAACTGATAGAAAAGCATTTTACG 540
|| |||.||.||....||.||.|||....||||.||||||||||||||.
BPUM_3432___s 666 -TGTTGCTGCTGTGAAACTTGGGGCAGCCATGATTGAAAAGCATTTTACA 714
BSNT_05794 541 ATCGATAAAGA-TCTGCCGGGTGCCGACCACTCGTTTGCATTAAATCCGG 589
||.||| |||| .||.||.||.|||||.|||||.|||||..|..||||.|
BPUM_3432___s 715 ATAGAT-AAGACACTTCCTGGCGCCGATCACTCCTTTGCGCTCGATCCAG 763
BSNT_05794 590 ATGAATTGAAAGAAATGG----------TCG-ATGGCATCAGGAAAACGG 628
|.|||||.||.||||||| ||| |.||| |||||| |
BPUM_3432___s 764 AAGAATTAAAGGAAATGGTTCAGCATATTCGAACGGC----GGAAAA--G 807
BSNT_05794 629 AAGCTGAGCTGAAA-CAGGGGATCACAAA-----GC-----CGGTCTCTG 667
|||| |||| || ||||.||| || |.||.||.|
BPUM_3432___s 808 AAGC------GAAATCA----ATCAGAAACTGATGCTCATTCTGTGTCAG 847
BSNT_05794 668 AAAAACTGCTTGGCAGTTCATACAAAACAACAACCTCCATCGAAGGAGAA 717
|..|.||.|||||||||||.|..|||||.|||||..||||.|||||..|.
BPUM_3432___s 848 AGGATCTCCTTGGCAGTTCTTTTAAAACGACAACAGCCATTGAAGGGCAG 897
BSNT_05794 718 ATCAGAAATTTTGCATACAGAGGCATTTTTACAACA----GCTCCGATTC 763
||..|..|.|||||.||..||||.||||||||.||| | ||||.
BPUM_3432___s 898 ATTCGTGAATTTGCGTATCGAGGGATTTTTACGACAAGAGG----GATTG 943
BSNT_05794 764 AAAAAGGTGAAGCCTTTAGTGAAGACAATATCGCAGTGCTTCGGCCCGGA 813
.|||.||.||..|.||.|..|||||.|||.|.||.||..|.||.||.|||
BPUM_3432___s 944 CAAAGGGCGAGACATTGACCGAAGAAAATCTAGCCGTATTACGTCCAGGA 993
BSNT_05794 814 C--AAAAGCCGCAGGGGCTGCACCC----------GAGATTTTTTGAACT 851
| |||||| ||.||.||.||.|| |||||||| |||
BPUM_3432___s 994 CAAAAAAGC--CAAGGTCTTCATCCGCGGTACATGGAGATTTT----ACT 1037
BSNT_05794 852 GCTGACCAGCGGTGTTCGG-----GCTGTAAGAGACATTCCAGCCGACAC 896
| || || |||||.|||||||||||||||.|.||
BPUM_3432___s 1038 G---------GG-----GGCAAAAGCTGTCAGAGACATTCCAGCCCATAC 1073
BSNT_05794 897 AGGCATTGTC-TGGGATGACATTTTACTGAAGGACAGCCCGT------TT 939
|||.||| || |||.|.||..|..|..||.|||| || .|
BPUM_3432___s 1074 AGGGATT-TCGTGGAAAGATGTGCTCATGCAGGA------GTCTGCAAAT 1116
BSNT_05794 940 CATGAATGA 948
.||.|||||
BPUM_3432___s 1117 GATCAATGA 1125
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