Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05796 and BPUM_3433

See Amino acid alignment / Visit BSNT_05796 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:22
# Commandline: needle
#    -asequence dna-align/BSNT_05796___spsD.1.24716.seq
#    -bsequence dna-align/BPUM_3433___spsD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05796___spsD-BPUM_3433___spsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05796___spsD-BPUM_3433___spsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05796___spsD
# 2: BPUM_3433___spsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1072
# Identity:     513/1072 (47.9%)
# Similarity:   513/1072 (47.9%)
# Gaps:         398/1072 (37.1%)
# Score: 948.5
# 
#
#=======================================

BSNT_05796___      1 ------------------------------GTGT----------------      4
                                                   ||||                
BPUM_3433___s      1 ATGAAGGTCGTTCATGCAATAGACGATCAGGTGTTATCCGTTTGGCTTGA     50

BSNT_05796___      5 ---ATACGGTAAAAGAAAATGTCTCCAAAGAGTTGATTGAGGAATTTCTC     51
                        |||||||.||            |||       |||||..||.|    
BPUM_3433___s     51 GAAATACGGTCAA------------CAA-------ATTGAACAAAT----     77

BSNT_05796___     52 CAAAGCCGACAGCTTACACTGGATGTTCCGTATCAATTTTCCCTCGGCCT    101
                     .||||      |||| ||             |.||.|||      |||||
BPUM_3433___s     78 GAAAG------GCTT-CA-------------AACAGTTT------GGCCT    101

BSNT_05796___    102 TTTTGAAAACAG-------CAGGCTCCAAGGCGTATTGCTTTACGAAGAT    144
                     |.||      ||       || ||||.|||..||..||.|.|||||    
BPUM_3433___s    102 TGTT------AGTGGCGCCCA-GCTCAAAGCGGTGCTGTTATACGA----    140

BSNT_05796___    145 TCTTTG-------TGGGAAAGCAAGG------TGCTTCAGAAGA-AAGTC    180
                        .||       |||||||||  ||      || .||||.|.| ...||
BPUM_3433___s    141 ---CTGGTCAAAATGGGAAAGC--GGCATATTTG-ATCAGCATATTTTTC    184

BSNT_05796___    181 A--TGAACGTCAAACTTCTTGCGGCAAAT-AGT-ACCGGGCAGCTAAAGA    226
                     |  |||| ||        ||||||||..| ||| |    |||.||     
BPUM_3433___s    185 ATGTGAA-GT--------TTGCGGCAGCTGAGTCA----GCATCT-----    216

BSNT_05796___    227 GGCTGTTT---GAAGCTTTTTATACTGTACGC-----CAAATGGATG---    265
                      ||| |||   |||    ||.||  .|.||||     |||.||||||   
BPUM_3433___s    217 -GCT-TTTCAGGAA----TTGAT--GGAACGCTTCATCAATTGGATGAGA    258

BSNT_05796___    266 ------AAACG-GATTTTATCTTTGTCCGTGTTCCCGCTGAAGATATCGG    308
                           |||.| ||||||.|||||.|.|||.|      |||||    |||
BPUM_3433___s    259 TCAGAAAAATGCGATTTTTTCTTTTTACGTCT------TGAAG----CGG    298

BSNT_05796___    309 -AGCCGCGCATGT-----GATACAGCAGCAGCC---ATCCTCTTAC-TTT    348
                      ||      ||||     .|.||.|||.| |||   |..||.|.|| |.|
BPUM_3433___s    299 CAG------ATGTTGAAAAAAACCGCATC-GCCCAAAGGCTGTCACATGT    341

BSNT_05796___    349 GTCGGGAGTTTGCTGAAGCTGGCGATGCCTC---CGTCTTTTTATGACAA    395
                     ||    |.|.|| ||     ||||  |.|||   ||||||        .|
BPUM_3433___s    342 GT----ACTATG-TG-----GGCG--GTCTCACTCGTCTT--------GA    371

BSNT_05796___    396 AACACCGCCATTTTT-----------------------TGAA---CTGGG    419
                     |.|||||||  |.||                       ||||   .|||.
BPUM_3433___s    372 AGCACCGCC--TGTTCACATGGAAATGCCATCAACAAGTGAAGATGTGGT    419

BSNT_05796___    420 C--CCGCCTGAGCCCGGA-GACACAGAAGCGATATG-TGAGCTGGCCCGA    465
                     |  |.|.|||   ||||| |    |.|||..|||.| ||||..||  .|.
BPUM_3433___s    420 CATCAGTCTG---CCGGATG----AAAAGGAATACGATGAGGCGG--TGT    460

BSNT_05796___    466 GACTCGTTTA-CA----------AAAAGCAGATAT----TTTCAGGATCC    500
                     .|||||.||| ||          ||||||.|.|||    ||    |||||
BPUM_3433___s    461 CACTCGCTTATCAGGCTTTTGTGAAAAGCCGGTATGCACTT----GATCC    506

BSNT_05796___    501 TCATCTCAGCC------GCGATGCAGCAAACAAAATATTTCAGGAGTGGA    544
                     | .|.|.||.|      |||.|.||||     |..|.|||||.||.||||
BPUM_3433___s    507 T-TTTTTAGACCAGAATGCGGTCCAGC-----ATTTCTTTCAAGAATGGA    550

BSNT_05796___    545 CACGAAACAATCTGAATGGAAGGGCGGCGGTCAATATTGTCGCTAAACAC    594
                     ....|||.|||.||...|||.|.||.|...|||||.|.|..||.||....
BPUM_3433___s    551 TGAAAAATAATTTGCTCGGACGTGCAGATATCAATCTCGCAGCAAAGGTG    600

BSNT_05796___    595 AATGGCGAGGTCATCGGCT--ATCTTC-AGGGCTTATCAAGAGATGATGA    641
                     ||||..||..||.|.||.|  |||  | ||||.|.||.||| ||.|||||
BPUM_3433___s    601 AATGATGAAATCGTTGGTTTGATC--CAAGGGTTGATAAAG-GACGATGA    647

BSNT_05796___    642 ATGCATTCTCGATTTGATGGCTGTAAAGCCGGGATTTG---AAGGAAAAC    688
                     ||...|.||.|||||..|.||..|.|..||   |..||   ||||||||.
BPUM_3433___s    648 ATTGGTGCTTGATTTACTTGCCATTAGACC---AGATGCACAAGGAAAAG    694

BSNT_05796___    689 G------------------TATTGCGTTTCATTTATTGGCGAA----TCT    716
                     |                  .||.||         |.|||.|||    |||
BPUM_3433___s    695 GACTCGGAAAGAAGCTGGTGATGGC---------AATGGTGAAAGCCTCT    735

BSNT_05796___    717 CAT-AGAACAACCGGAG---ACCCAGAAGCATAGAACGGTAACAGCGGGG    762
                     .|| |||       |||   |||  ||...||      ||  |.||.||.
BPUM_3433___s    736 TATGAGA-------GAGGGCACC--GATTTAT------GT--CGGCCGGA    768

BSNT_05796___    763 ACGCAGCTCCACAATGTAAGGGCGATCCGCCTTT---ATGAACGAA----    805
                     ||.|||.|.||.||...||       |||||.||   .||.|||||    
BPUM_3433___s    769 ACTCAGATGCATAACACAA-------CCGCCATTCAGCTGTACGAAAAGC    811

BSNT_05796___    806 TGGGCTTCACCGCTGAACAA-----TCGTATTACTATTATCATATTTGGC    850
                     |||||||.|     ||||||     ||.|.||..|||||.|||.|.||||
BPUM_3433___s    812 TGGGCTTTA-----GAACAAAAAATTCTTTTTTGTATTACCATGTATGGC    856

BSNT_05796___    851 CGGGCAAGGAGGCGAAA--TAA    870
                     |  |.||..|||.||.|  |||
BPUM_3433___s    857 C--GAAAAAAGGAGAGAGGTAA    876


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