Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05801 and BPUM_3436
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:23
# Commandline: needle
# -asequence dna-align/BSNT_05801___spsA.1.24716.seq
# -bsequence dna-align/BPUM_3436___spsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05801___spsA-BPUM_3436___spsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05801___spsA-BPUM_3436___spsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05801___spsA
# 2: BPUM_3436___spsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity: 530/837 (63.3%)
# Similarity: 530/837 (63.3%)
# Gaps: 123/837 (14.7%)
# Score: 1496.0
#
#
#=======================================
BSNT_05801___ 1 ---------TTGCCTAAAGTATCAGTCATTATGACGAGCTATAACAAAAG 41
|||.|.||||||.|.|||||||||||||||||.||| ||.|
BPUM_3436___s 1 GTGAAAACTTTGACAAAAGTAACTGTCATTATGACGAGCTACAAC-AAGG 49
BSNT_05801___ 42 C-GATTATGT-GGCAAAGTCCATT-------TCTAGCATACTCTCACAAA 82
| |.|||.|| ||||.| ||.||| |.|.||| .||.|
BPUM_3436___s 50 CGGCTTACGTCGGCAGA-TCGATTGAAGCGATTTTGCA-------GCAGA 91
BSNT_05801___ 83 CGTTTTCAGATTTTGAATTGTTTATTATGGATGACAACTCCAATGAAGAG 132
||.|.|||||.||||||.|.|||||.|||||.||....||.||.|||.|.
BPUM_3436___s 92 CGCTGTCAGACTTTGAACTATTTATCATGGACGATGGTTCAAACGAAAAA 141
BSNT_05801___ 133 ACGCTGAATGTAATCCGTCCTTTTTTGAATGATAACCGAGTGCGTTTTTA 182
||.||...||||||....||.|||...||.|||..|||.||.| .|||||
BPUM_3436___s 142 ACCCTTGCTGTAATTGAGCCCTTTCGCAAAGATCCCCGTGTTC-ATTTTA 190
BSNT_05801___ 183 T-CAAAGCGATGT---AT--CTGGAGTGAAGGAAAGAACAGAAAAAACGA 226
| |||||||.||| || |||| ||||.|||||||..|||||..
BPUM_3436___s 191 TCCAAAGCGGTGTCAAATCGCTGG-----AGGAGAGAACAGCGAAAACCC 235
BSNT_05801___ 227 GATACGCGGCACTGATCAATCAGGCGATTGAGA--TGGCGGAGGGTGAAT 274
|||||||.|..||.||.|||||.|| ||.||| |.||..||||.||.|
BPUM_3436___s 236 GATACGCTGTCCTCATTAATCAAGC--TTTAGAACTAGCAAAGGGGGAGT 283
BSNT_05801___ 275 ATATCACCTATGCGACGGATGACAACATCTATATGCCGGACCGCCTCCTG 324
||||..|||||||.||.||||||||..|||||...||||||||..|...|
BPUM_3436___s 284 ATATTTCCTATGCCACAGATGACAATGTCTATGCCCCGGACCGTTTAGAG 333
BSNT_05801___ 325 AAAATGGTGCAGGAGCTCGATACCCATTCTGAAAAGGCT-------GTGA 367
||| ||| ||.||||.|..|.|.||| ||||
BPUM_3436___s 334 AAA------------CTC---ACACATTATCTAGATGCTCGTCCAGGTGA 368
BSNT_05801___ 368 --------TTTACTCAGCCTCCAA---AACCTATCATTTAAA---CGAGA 403
|.||.||.||.||.|| ||.|| ||||||| | |.|
BPUM_3436___s 369 AGATATTGTCTATTCTGCATCGAAAGTAATCT---ATTTAAATAGC-AAA 414
BSNT_05801___ 404 ATCGCGACATTGTAAAAGAAACTGTCAGGCCTGCCGCTCA-AGTGACATG 452
|..|.|.|| ||.||.|||||..|..|.|||| |||..| ||||..|||
BPUM_3436___s 415 AAAGAGCCA--GTTAAGGAAACGATTCGACCTG-CGCAAACAGTGCAATG 461
BSNT_05801___ 453 GAACGCACCGTGCGCAATTGATCATTGCTCGGTGATGCACAGGTATTCGG 502
|||.|||||.||.||.||.|||||||||||.||..|.|| || |
BPUM_3436___s 462 GAATGCACCTTGTGCTATAGATCATTGCTCAGTCGTTCA-------TC-G 503
BSNT_05801___ 503 TGC-------TTGAGAAGGTAAA-----GGAGAAGTTTGGCTCCTATTGG 540
||| ||.|.|| ||| |..||| |||||.||.||.|||
BPUM_3436___s 504 TGCTTCTATTTTAACAA---AAATCCATGCTGAA-TTTGGGTCTTACTGG 549
BSNT_05801___ 541 GATGAAAGCCCGGCGTTTTACCGTATAGGAGATGCGCGGTTCTTTTGGAG 590
||.||.||.|||...|||||.||.|||||.|||||.||||||||||...|
BPUM_3436___s 550 GACGAGAGTCCGCATTTTTATCGAATAGGGGATGCTCGGTTCTTTTTTCG 599
BSNT_05801___ 591 AGTCAATCATTTTTATCCGTTTTACCCGCT-GGATGAGGAGCTGGACCTG 639
|.|.||||||||||||||.||.||.|| || .|||||.|.|.|.||....
BPUM_3436___s 600 ATTAAATCATTTTTATCCATTCTATCC-CTATGATGAAGTGTTAGATACA 648
BSNT_05801___ 640 AATTATATTACCGACCAATCGATTCACTTTCAGCTGTTTGAATCAGAAAA 689
|||||.||.||.||.||.||||||||||.||||.||...|||..|||.||
BPUM_3436___s 649 AATTACATCACAGAGCAGTCGATTCACTATCAGTTGGCGGAAGAAGAGAA 698
BSNT_05801___ 690 AAATGAATTT-GTCAGGAACCTTCCTCCGCAGCGAAATTGCCGAGAGCTG 738
||.||..||| .|||.|.| ||||||..||||...|..|||.|.|||||.
BPUM_3436___s 699 AAGTGCTTTTATTCAAGCA-CTTCCTGAGCAGTCTACCTGCTGGGAGCTC 747
BSNT_05801___ 739 CGTGA-ATCATTAA---AAAAGCTTGGAATGGGGTGA 771
||..| || ||||| ||||.|.||| |.|||||
BPUM_3436___s 748 CGCCACAT-ATTAAAACAAAAACATGG---GAGGTGA 780
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