Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05813 and BPUM_3444

See Amino acid alignment / Visit BSNT_05813 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_05813___ung.1.24716.seq
#    -bsequence dna-align/BPUM_3444___ung.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05813___ung-BPUM_3444___ung.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05813___ung-BPUM_3444___ung.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05813___ung
# 2: BPUM_3444___ung
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 706
# Identity:     500/706 (70.8%)
# Similarity:   500/706 (70.8%)
# Gaps:          53/706 ( 7.5%)
# Score: 1662.0
# 
#
#=======================================

BSNT_05813___      1 TTGAAACAGCTTTTACAAGACAGCTGGTGGAATCAGCT-------AAAG-     42
                     .||||.|...|||||.|.||.|||||||||     |||       |||| 
BPUM_3444___u      1 ATGAAGCCATTTTTAAATGATAGCTGGTGG-----GCTGTGATGAAAAGT     45

BSNT_05813___     43 GAAGAGTTTGAGAAACCGTATTATCAAGAGCTCAGAGAAATGCTGAAGCG     92
                     |||   |||||..|.||.||||||||.||..|..|.|||..|.|||||..
BPUM_3444___u     46 GAA---TTTGAACAGCCATATTATCAGGAATTACGTGAATGGATGAAGGA     92

BSNT_05813___     93 GGAATA-CGCGGA-GCAAACGATTTATCCGGACAGCCGG--GATATTT-T    137
                     .||||| |||  | |||.||..|||.||||  .|.||||  ||..||| |
BPUM_3444___u     93 AGAATATCGC--ACGCAGACCGTTTTTCCG--AAACCGGATGACGTTTAT    138

BSNT_05813___    138 CAATGCGCTGCATTATACATCATATGATGATGTCAAGGTCGTCATTCTGG    187
                     | .||||||.||||..|||||||||||.||.|||||.||.||.|||.|||
BPUM_3444___u    139 C-GTGCGCTTCATTTGACATCATATGAAGAGGTCAAAGTGGTGATTTTGG    187

BSNT_05813___    188 GACAAGATCCGTATCACGGGCCGGGACAGGCTCAAGGTTTAAGCTTCTCT    237
                     |||||||.||.|||||.||.||.||||||||.||.||.||||||||.|||
BPUM_3444___u    188 GACAAGACCCTTATCATGGCCCAGGACAGGCACATGGATTAAGCTTTTCT    237

BSNT_05813___    238 GTCAAGCCCGGTGTAAAGCAGCCGCCTTCGTTAAAAAATATTTTTCTTGA    287
                     |||.||||.||.||.|||||.||.||.|||||.|.|||||||||||..||
BPUM_3444___u    238 GTCCAGCCTGGCGTGAAGCATCCACCATCGTTGAGAAATATTTTTCAGGA    287

BSNT_05813___    288 GCTGCAGCAGGATATCGG--GTGCAGCATCCCGAATCACGGGTCGCTTGT    335
                     |||..||.|.|||.|.||  ||.|.|  |.||.||||||||.||.|||||
BPUM_3444___u    288 GCTAAAGGATGATCTTGGCTGTCCTG--TTCCAAATCACGGCTCACTTGT    335

BSNT_05813___    336 GAGCTGGGCAAAGCAAGGCGTTCTTTTGCTGAATACTGTGCTGACAGTAA    385
                     ||||||||||.|||||||.||.||..|..|.||.||||||.||||.||||
BPUM_3444___u    336 GAGCTGGGCAGAGCAAGGTGTGCTGCTCTTAAACACTGTGTTGACCGTAA    385

BSNT_05813___    386 G---GCGCGGACAGGCGAATTCCCATAAGGGAAAAGGCTGGGAGCGACTG    432
                     |   |.|||   |||||||.||.|||||.||.|||||||||||.||..||
BPUM_3444___u    386 GAAAGGGCG---AGGCGAACTCGCATAAAGGCAAAGGCTGGGAACGTGTG    432

BSNT_05813___    433 ACGGACCGAATTATTGACGTGCTGAGTGAAAGAGAGCGGCCGGTTATCTT    482
                     ||.|||||..|.||.||.|.|||||.||||.|.||.|.|||.||..|.||
BPUM_3444___u    433 ACAGACCGTGTGATAGATGCGCTGAATGAACGTGATCAGCCCGTCGTTTT    482

BSNT_05813___    483 TATTTTGTGGGGACGGCATGCTCAAATGAAAAAAGAACGGATCGACACCT    532
                     |.|..||||||||.|.||||||||||..||.||||||||.||.|||    
BPUM_3444___u    483 TGTGCTGTGGGGAAGACATGCTCAAAATAAGAAAGAACGCATTGAC----    528

BSNT_05813___    533 C----CAAGCATTTTATCATTGAATCGACGCATCCCAGCCCGTTTTCTGC    578
                     |    ||||||||..||||||||.||..|.|||||.||.||.|||||.||
BPUM_3444___u    529 CAAAACAAGCATTACATCATTGAGTCACCTCATCCAAGTCCTTTTTCAGC    578

BSNT_05813___    579 GAGAAACGGATTTTTCGGGAGCAGACCGTTTTCCCGGGCGAATGCCTATT    628
                     .||||||||.|||||.||.||..|.||||||||...||..||.||.||||
BPUM_3444___u    579 AAGAAACGGCTTTTTTGGCAGTCGTCCGTTTTCAAAGGTAAACGCGTATT    628

BSNT_05813___    629 TGGAGAAAATGGG---AGAGGCGCCGATTGATTGGTGTATTAAGGAT-TT    674
                     |..||.|||||||   |||.|   ..|||.||||||||||..|.||| ||
BPUM_3444___u    629 TAAAGCAAATGGGGACAGAAG---AAATTAATTGGTGTATCCAAGATATT    675

BSNT_05813___    675 G--TAA    678
                     |  |||
BPUM_3444___u    676 GAATAA    681


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