Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05833 and BPUM_3461

See Amino acid alignment / Visit BSNT_05833 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:25
# Commandline: needle
#    -asequence dna-align/BSNT_05833___qoxD.1.24716.seq
#    -bsequence dna-align/BPUM_3461___qoxD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05833___qoxD-BPUM_3461___qoxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05833___qoxD-BPUM_3461___qoxD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05833___qoxD
# 2: BPUM_3461___qoxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 410
# Identity:     268/410 (65.4%)
# Similarity:   268/410 (65.4%)
# Gaps:          64/410 (15.6%)
# Score: 853.5
# 
#
#=======================================

BSNT_05833___      1 ATGGC-----AAACAAA----TCTGCTGAACACAGTCACTTTCCATGGAA     41
                     |||||     |||||.|    ||.||.||.|||...|||||.||.|||||
BPUM_3461___q      1 ATGGCTGGAAAAACACATTCCTCAGCAGAGCACGAACACTTCCCTTGGAA     50

BSNT_05833___     42 ACACATTGTAGGTTTTATCCTGTCTATCGTTTTGACCCTGCTGGCTCTAT     91
                     ||||.|.||.||.||.||.||.||.|||||..|.|||.|..|.||..|.|
BPUM_3461___q     51 ACACGTAGTTGGCTTCATTCTATCCATCGTGCTAACCGTTTTAGCATTCT    100

BSNT_05833___     92 GGGTTGCAGTGTATACTGACCTGAGCTCA----------TCAGCAAAACT    131
                     ||.||||      ||.||    |||||.|          ||.||||||||
BPUM_3461___q    101 GGATTGC------TATTG----GAGCTGAAATTGGCAGTTCTGCAAAACT    140

BSNT_05833___    132 TTGGATTATCTTCGGCTTCGCCTTCATTCAGGCGGCGCTGCAGCTTCTCA    181
                     .|||||||||||.||.||.||.||||||||.|||....|||||||..|||
BPUM_3461___q    141 ATGGATTATCTTTGGTTTTGCTTTCATTCAAGCGTTCTTGCAGCTATTCA    190

BSNT_05833___    182 TGTTCATGCATATGACAGAGAGCGAAAACGGCACGATCCAAGTCGGAAAC    231
                     ||||.|||||.||||||||.|||||.|||||.||..|.|||||||||||.
BPUM_3461___q    191 TGTTTATGCACATGACAGAAAGCGAGAACGGAACTGTTCAAGTCGGAAAT    240

BSNT_05833___    232 ACGCTGTTCGGATTCTTTGGCGCGA------TCGTTATCGTACTTGGATC    275
                     ||..||||.||..|.|||.|.||||      ||||||||      |||||
BPUM_3461___q    241 ACATTGTTTGGTCTGTTTTGTGCGATTATCTTCGTTATC------GGATC    284

BSNT_05833___    276 CATCTGGATTTTCGCGGCTCACTATCA-CCATGGTG-----ACCATATGG    319
                     ..|.|||||.||.||||||||||| || |||.||.|     |.||.|  |
BPUM_3461___q    285 TGTTTGGATCTTTGCGGCTCACTA-CAGCCACGGAGAGAACAGCAAA--G    331

BSNT_05833___    320 ACGGAAAT---CCTCCTGGAGGCGCTGAA-CACTCAGAGCATTCAGGCCA    365
                     ||||..||   |||.||    ||||..|| ||.||.||||||||||    
BPUM_3461___q    332 ACGGTTATTCACCTTCT----GCGCCAAAGCAATCTGAGCATTCAG----    373

BSNT_05833___    366 TAACGAATAA    375
                       |..|||||
BPUM_3461___q    374 --AGAAATAA    381


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