Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05842 and BPUM_3466

See Amino acid alignment / Visit BSNT_05842 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:25
# Commandline: needle
#    -asequence dna-align/BSNT_05842___galT.1.24716.seq
#    -bsequence dna-align/BPUM_3466___galT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05842___galT-BPUM_3466___galT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05842___galT-BPUM_3466___galT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05842___galT
# 2: BPUM_3466___galT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1702
# Identity:    1048/1702 (61.6%)
# Similarity:  1048/1702 (61.6%)
# Gaps:         341/1702 (20.0%)
# Score: 2965.0
# 
#
#=======================================

BSNT_05842___      1 -------ATGAGTATTATTGAACATCTGGAACAGCTGCTTGAGTATGGCC     43
                            .||| ||||.|||||.|.||||||||||||.||.|.|||||..
BPUM_3466___g      1 ATGGCGATTGA-TATTTTTGAAAAGCTGGAACAGCTGATTCAATATGGGA     49

BSNT_05842___     44 TGGAACGAAAA--------------TTGATTTCGATCTGGGATCGGGAAT     79
                     | .||..||||              |.|||.||             ||||
BPUM_3466___g     50 T-CAATAAAAAGCTCATAACATCACTAGATATC-------------GAAT     85

BSNT_05842___     80 ATACGAGAAA------------------CCGTCTTTATGAAGCGCTGGGC    111
                     ||||||||||                  |.|.|||.|||||||    ||.
BPUM_3466___g     86 ATACGAGAAATCGATTGCTTGAGGTGCTCAGGCTTGATGAAGC----GGA    131

BSNT_05842___    112 ATCA--CACATCCCGAGCCGGTCTCCAGCACCAG-----CATCAAG-CAG    153
                     |.||  .|||          ||| ||||.|..||     |.|.||| || 
BPUM_3466___g    132 AACAAGAACA----------GTC-CCAGGAGAAGAAGACCTTGAAGACA-    169

BSNT_05842___    154 TCACAAAGCC--TGCCGGACTTGCTAGCTCCCATCTATAAATGGGCTGCG    201
                     ||..||.|||  |||                  ||.||   |||||.|..
BPUM_3466___g    170 TCTTAATGCCAATGC------------------TCGAT---TGGGCAGTA    198

BSNT_05842___    202 GAAACCGGCCGAA----TGGAAGCGGATACAGATACGTACCGTGACCTGC    247
                     |||||.||.|.||    ||  ||.||  ||.||||||||.|||||..|.|
BPUM_3466___g    199 GAAACAGGGCTAATTCCTG--AGGGG--ACGGATACGTATCGTGATTTAC    244

BSNT_05842___    248 TCA---GCGCAAAGCTGATGGGCTGTTTTGTGCCTGCCCCGTCCGAG-GT    293
                     | |   |||.|||  |.|||||||||||.|||.||    |.|||.|| ||
BPUM_3466___g    245 T-AGATGCGAAAA--TTATGGGCTGTTTGGTGGCT----CCTCCAAGTGT    287

BSNT_05842___    294 ----CATTCGCAAATTTGAAGAGACAAAAGCATTATACGGCCCAAAACAG    339
                         .||.|| ||.|||||||    ||||||        ||   ||.|||
BPUM_3466___g    288 TATCTATGCG-AAGTTTGAAG----AAAAGC--------GC---AAGCAG    321

BSNT_05842___    340 GCG---ACAAAGG------------AATTCTATCAATATTCAG-AGGATG    373
                     |.|   .|.||||            ..|||||| .|.||.||| ||.|||
BPUM_3466___g    322 GAGGGACCGAAGGCTGCTACGAGCTGGTTCTAT-GAGATGCAGAAGCATG    370

BSNT_05842___    374 TCTATTATATACGGACTGACAGAATTGCCAAAAATGTTCATTGG---ACG    420
                     .|.||||.||.|..||.|.|||.||.|||||||||||.||.|||   || 
BPUM_3466___g    371 CCCATTACATTCATACAGGCAGGATCGCCAAAAATGTACAGTGGTTTAC-    419

BSNT_05842___    421 GTGCCGACCGAATATGGCGAGCTGGAAATGACCATTAACCTATCAAAGCC    470
                       .||.||.||..||||||.||||||.||.||||||||.|||||||||||
BPUM_3466___g    420 --ACCAACAGACGATGGCGTGCTGGAGATCACCATTAATCTATCAAAGCC    467

BSNT_05842___    471 TGAAAAGGACCCGAAAGCGATTGCGGCTGCAA---AAG-AGCAGGAACAG    516
                     .|||||.||.||.|||||.||.||    .|||   ||| |||    .|||
BPUM_3466___g    468 AGAAAAAGATCCTAAAGCCATCGC----TCAAGCGAAGAAGC----TCAG    509

BSNT_05842___    517 ACAA----ATTATCCGATGTGTTTGCTGTGTAAAGAAAATGTCGGCTTCG    562
                     .|||    |.|||||..|.|||.|.||.|||||||||||.||.||.||||
BPUM_3466___g    510 TCAAAAGCAATATCCCCTTTGTCTCCTTTGTAAAGAAAACGTTGGGTTCG    559

BSNT_05842___    563 AGGGAAGCGTGAATCATCCAGCCCGGCAAAATCACAGAATCATTCC--GG    610
                     ||||.||.||.|||||||||||..|.||.|||||..|.||||||||  .|
BPUM_3466___g    560 AGGGCAGGGTCAATCATCCAGCGAGACAGAATCATCGGATCATTCCTGTG    609

BSNT_05842___    611 TCATCCT-TGAGGACGAACAATGGTTCCTGCAATTCTCGCCATATGTCTA    659
                     |||  || |.||| ||||...|||||.||||||||.||.||.|||||.||
BPUM_3466___g    610 TCA--CTCTCAGG-CGAATCGTGGTTTCTGCAATTTTCACCTTATGTGTA    656

BSNT_05842___    660 TTATCCGGAGCACTGCATTGTCTTAAAAGGTGAACATGAACCGATGGAG-    708
                     .||....|||||.|||||.||.||.|||||..||||||||||.|| ||| 
BPUM_3466___g    657 CTACAACGAGCATTGCATAGTGTTCAAAGGCAAACATGAACCAAT-GAGC    705

BSNT_05842___    709 ATCAGCAAAAAAACATTTGGAAGGCTGCTGGCATTTCTTGGCCA------    752
                     ||||.||||||.||.||||.|.|.|||||    ||.|||   ||      
BPUM_3466___g    706 ATCACCAAAAAGACCTTTGAACGACTGCT----TTCCTT---CATATCTA    748

BSNT_05842___    753 -ATATCCGCATTATTTTATCGGTTCAAACGCGGATCTGCCGATTGTCGGC    801
                      |||.|||||.|||||.|||||.||||||||.||.||.|||||||||||.
BPUM_3466___g    749 TATACCCGCACTATTTCATCGGGTCAAACGCCGACCTTCCGATTGTCGGA    798

BSNT_05842___    802 GGCAGCATCCTAAGCCATGATCATTTCCAAGGCGGCGCGCATGATTTTCC    851
                     |||||.||..||||.|||||.|||||.||.|||||.||.|||||.|||||
BPUM_3466___g    799 GGCAGTATATTAAGTCATGACCATTTTCAGGGCGGTGCACATGAATTTCC    848

BSNT_05842___    852 AATGGCACGTGCAGAAGCGGAAGACGT-TTATGAATTAAATGATTATCCC    900
                     .||||||...|||||...||||||.|| ||.|...|.|||          
BPUM_3466___g    849 GATGGCAAAAGCAGAGATGGAAGAAGTCTTTTCTCTCAAA----------    888

BSNT_05842___    901 GGCGTGTC-----------GCTGGGCTTAGTGAAGTGGCCGATGTCTGTG    939
                      ||.|.||           |||||..|| |||||.|||||||||||||||
BPUM_3466___g    889 -GCCTTTCCAAATGTGCGAGCTGGTATT-GTGAAATGGCCGATGTCTGTG    936

BSNT_05842___    940 CTCAGGC-TCCAAGGAGACGAACCG-GGTCATG-TCGCCGAAGCTGCTGA    986
                     .||.|.| ||.|||.|| .||.|.| .|||  | ||||.||.||.||.||
BPUM_3466___g    937 ATCCGCCTTCGAAGCAG-TGAGCAGCAGTC--GCTCGCAGACGCAGCAGA    983

BSNT_05842___    987 CCATATCTTCCGCAC----GTGGCAGAC-GTATTCCGATGAAAAAGCCGG   1031
                     ...||||||    ||    |||| |.|| ||||||.||||||.|.|..||
BPUM_3466___g    984 TTTTATCTT----ACATGAGTGG-AAACTGTATTCAGATGAAGAGGTGGG   1028

BSNT_05842___   1032 CATTGCCGCCTATACAGGCGATACGCCCCATAATACGGTCACACCGATTG   1081
                     ..|...|||..|||||||.||.||.||.||.|||||..|.||.||.||||
BPUM_3466___g   1029 GGTGATCGCTCATACAGGAGAGACTCCTCACAATACCATTACTCCTATTG   1078

BSNT_05842___   1082 CGCGGCG-CA-GGGGA-GACTTGTACGAACTCGATATCGTACTGAGGAAC   1128
                     |.||||| || ||||| |||   ||.|||.|.|||.|.||.|||.|.||.
BPUM_3466___g   1079 CTCGGCGTCACGGGGATGAC---TATGAATTAGATTTAGTGCTGCGTAAT   1125

BSNT_05842___   1129 AACCGGACGGATGAGGAGCATCCATTAGGA----ATATTTCATCCTCATC   1174
                     ||||||||..|..||.||||.||    |||    ||.||.|||||.||..
BPUM_3466___g   1126 AACCGGACAAACAAGCAGCACCC----GGACGGCATTTTCCATCCGCACG   1171

BSNT_05842___   1175 AAGAAGTCCACCATATTAAAAAAGAAAATATCGGCCTGATTGAGGTCATG   1224
                     |||||||.|||||||||||||||||.||||||||..|.|||||.||||||
BPUM_3466___g   1172 AAGAAGTTCACCATATTAAAAAAGAGAATATCGGATTAATTGAAGTCATG   1221

BSNT_05842___   1225 GGATTGGCGATATTGCCTGGCCGCTTA-CAGGAGGAAATGAAAG------   1267
                     ||..|.||..|..|.|||||..|.||| || ||||||.|  |||      
BPUM_3466___g   1222 GGCCTTGCTGTGCTTCCTGGTAGATTAGCA-GAGGAATT--AAGCCAATT   1268

BSNT_05842___   1268 AAACGGCAGCGGCGCTATGCTCTGCTGATCCAAAA--ACAGCCTT--AGA   1313
                     |||.|           |.|||.|.|| ||||.|||  .||  |||  |||
BPUM_3466___g   1269 AAAAG-----------AGGCTTTACT-ATCCGAAAGTCCA--CTTGAAGA   1304

BSNT_05842___   1314 A--CAAAATCCGCTCACGGCAAAGCATAGTGAA----------TGGGCTC   1351
                     |  ||||..||| ||..|  |||.||   ||||          |||||..
BPUM_3466___g   1305 AATCAAAGCCCG-TCCTG--AAATCA---TGAAGCACGAGGCTTGGGCAA   1348

BSNT_05842___   1352 TTCGGATGATGGAAAAAAGAACCATAACAAAAGAGAATGCAGATCTAGTC   1401
                     ..||||||.|.|||.|.|..|||.|.|||.|.||.|||.|   ||.|..|
BPUM_3466___g   1349 AGCGGATGCTTGAAGAGAACACCTTTACAGAGGATAATAC---TCAAACC   1395

BSNT_05842___   1402 A---TAAAAGAAGAGCTGGGACATGTATTCGCTCGCATTCTTGAACACGC   1448
                     |   ||.||.||||.||.||...|.|.||..||||.|||||...|||.||
BPUM_3466___g   1396 ATTTTACAAAAAGAACTTGGTGTTATTTTTTCTCGAATTCTCTCACAGGC   1445

BSNT_05842___   1449 CGGTGTATTTAAACAGA---CAGCAGTGGGAAAACAGGCCTTCAGAAGGT   1495
                     .|||||.|||||| |||   .|||| .||||||||| ||.||.|...|.|
BPUM_3466___g   1446 AGGTGTGTTTAAA-AGAACTGAGCA-AGGGAAAACA-GCTTTTAACCGTT   1492

BSNT_05842___   1496 TCA-TCGATCAGTTGGGCGCCAAAC---CA-GTCAAAAGCCTCAACCGCT   1540
                     ||| ||.|.||.||      |||||   || ||.|               
BPUM_3466___g   1493 TCATTCAAACACTT------CAAACAGGCAGGTGA---------------   1521

BSNT_05842___   1541 AG   1542
                       
BPUM_3466___g   1521 --   1521


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