Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05843 and BPUM_3468
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_05843___galK.1.24716.seq
# -bsequence dna-align/BPUM_3468___galK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05843___galK-BPUM_3468___galK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05843___galK-BPUM_3468___galK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05843___galK
# 2: BPUM_3468___galK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1293
# Identity: 804/1293 (62.2%)
# Similarity: 804/1293 (62.2%)
# Gaps: 228/1293 (17.6%)
# Score: 2220.0
#
#
#=======================================
BSNT_05843___ 1 ------ATG--CGGGAAGAGCTAAAG-GGGATATTT-----GCAAGTGTA 36
||| |||.|.| |.|.| |.|..|||| ||| |
BPUM_3468___g 1 ATGGATATGATCGGTACG---TTACGCGCGGCATTTCACCAGCA-----A 42
BSNT_05843___ 37 TTCGGAGAAAAAGAGGGATTACGGTTTTTTTTCGCACCTGGAAGAGTGAA 86
||.|||||.|.|||.|.|.|.||.|.||||||.||.||.|||||||||||
BPUM_3468___g 43 TTTGGAGATAGAGAAGAACTTCGCTATTTTTTTGCCCCAGGAAGAGTGAA 92
BSNT_05843___ 87 TCTGATTGGAGAACATACAGACTATAACGGCGGGCATGTATTTCCGTGCG 136
..|||||||.|||||||||||.|||||.||.||.|||||.|||||.||.|
BPUM_3468___g 93 CTTGATTGGTGAACATACAGATTATAATGGAGGACATGTGTTTCCATGTG 142
BSNT_05843___ 137 CGCTGACAATGGGTACATATGCTGCTGTTGCAGAAAGAAAAGACGGGCTT 186
||||.||..|.||.||.|||||||||..||||.||.|...|||.||.|..
BPUM_3468___g 143 CGCTTACTCTCGGAACGTATGCTGCTTGTGCAAAACGTTCAGATGGCCGC 192
BSNT_05843___ 187 GTCCGGATGTATTCAGATAACTTTAGA-AACGCAGGCATCAAGGAATGCA 235
.|..|.||||||||....|||||| || ..||..||..|.||.||||.||
BPUM_3468___g 193 ATAAGAATGTATTCCTTGAACTTT-GAGGGCGATGGTGTGAAAGAATTCA 241
BSNT_05843___ 236 GCCTTGACGACATTCGCTATCAAAAAGAA---GACGACTGGGCGAACTAC 282
..|||...|| |.|||| |.|...|||| ||||.||||||.||.||.
BPUM_3468___g 242 ATCTTTTTGA-AATCGC--TTACGTAGAATCGGACGGCTGGGCAAATTAT 288
BSNT_05843___ 283 CCAAAAGGCGTGATTTATGAATTTCAACAGAGG--GGATATGCAGTTCCC 330
||.||.||.|||.|..|..|.||| |.|||.| ||| |||.||
BPUM_3468___g 289 CCGAAGGGTGTGTTCAAACAGTTT--ATAGAAGCAGGA-ATGAAG----- 330
BSNT_05843___ 331 CAT-------GGCTTTGACATTGTATTTTCA--GGGAATATTCCAAACGG 371
|| ||||||||||||| |.|.|| ||.|||||||||||.||
BPUM_3468___g 331 -ATAGAAGAAGGCTTTGACATTG--TGTACAGCGGCAATATTCCAAATGG 377
BSNT_05843___ 372 GGCGGGGCTGTCGTCTTCCGCTTCTATTGA-------ACTGCTGATGGGG 414
|||.||.|||||.||.||.||.||.||.|| ||.||||
BPUM_3468___g 378 GGCAGGTCTGTCTTCCTCTGCCTCCATAGAGCTTGTCACCGCTG------ 421
BSNT_05843___ 415 GTCGTGCTCCAAAACTATTTTCATC-CTGAAGTAG-----AT---GCGCT 455
||.||||| .|||| |.| || |||.|
BPUM_3468___g 422 -----------------TTCTCATCAATGAA-TGGCATTCATTCGGCGTT 453
BSNT_05843___ 456 TGAGCTTGTGAAAATGG---------CGCAGCATGCGGAAAACCATTTTA 496
|.| ..|||..||.|.| |.||||.|||.||.||..|.||||
BPUM_3468___g 454 TCA-AATGTCCAACTCGCTCTTCTTTCTCAGCGTGCAGAGAATGAATTTA 502
BSNT_05843___ 497 TCGGCGTCAATTGCGGAATTATGGACCAATTTGCAATTGGAATGGGGAAA 546
|.||.|||||||||||.||.|||||.||.|||.|.||||...|.||.|||
BPUM_3468___g 503 TTGGTGTCAATTGCGGGATCATGGATCAGTTTTCGATTGCCCTTGGAAAA 552
BSNT_05843___ 547 AAACATCATGCGATGCTGCTGAACTGTGACACGCTTGACTATGAATATAG 596
.||.||||.||.||..||||.||.|||||.||.||||.||..||||||||
BPUM_3468___g 553 GAAGATCACGCCATTTTGCTCAATTGTGATACCCTTGCCTTCGAATATAG 602
BSNT_05843___ 597 CAAACTCAATGTCTC-------AGGCCTCGCGCTGGTCATCGCGAATACG 639
.|.||.|| |||.||.|||||.||||||||.|||||.
BPUM_3468___g 603 -------TACGTTTCGACAAGAAGGACTTGCGCTTGTCATCGCCAATACA 645
BSNT_05843___ 640 AACAAAAAAAGAACATTGGCTGACTCAAGCTATAATACGAGACGCC---A 686
||.|||||..|.|||.||||.||.||.|..|||||| ||| |||| .
BPUM_3468___g 646 AATAAAAAGCGGACACTGGCAGATTCCAAATATAAT--GAG-CGCCGGGC 692
BSNT_05843___ 687 AGAATG-CAATGATGCATTGCTTGATCT---GAAAAAAGGCCTCGATATT 732
|||.|| |||| ..||.||...|||||| ||||||| .||||.|||
BPUM_3468___g 693 AGAGTGTCAAT-CCGCTTTAAATGATCTACAGAAAAAA---ATCGACATT 738
BSNT_05843___ 733 ACAGCAC-----TGGGCGACATCAAGCCTTCTGATTTCGA---TGCGCA- 773
|| .||| ||.|| ||| ||.|.||| || |||..|
BPUM_3468___g 739 AC-CCACTTATGTGAGC----TCA---CTGCGGAT---GAATTTGCAGAG 777
BSNT_05843___ 774 -TT--CCAGCCTGATCCAAAATGAAACGAACAGACGC---CGGGCAAAGC 817
|| ||| |.||||..||.|||| .|.|.|.||| |||||||..|
BPUM_3468___g 778 GTTGCCCA-CTTGATTGAAGATGA---CATCTGCCGCAAACGGGCAAGAC 823
BSNT_05843___ 818 ACGCTGTATAC-GAAAATCACCGTGCTATCAAGA-CGGCCCATA----TG 861
|.|..|| .|| ||||||.|.||..|.|| |||| || ||| |.
BPUM_3468___g 824 ATGTCGT-GACGGAAAATGAGCGGACCAT-AAGAGCG----ATAAATTTC 867
BSNT_05843___ 862 TTCAAAGAGAACAATATAGATGAAATCGGGCAGTTA---------ATGAA 902
|| |||.||| |||.||||.|...||||| |||||
BPUM_3468___g 868 TT------GAAAAAT---GATAAAATTGAAAAGTTAGGCGCACTCATGAA 908
BSNT_05843___ 903 GGAATCCCACCTTTCATTGAAGGATGACTATGAAGTAACATGCCCTGAAC 952
||..||.||.||||||||.|||.||||.||||||||||||.|.|.|||||
BPUM_3468___g 909 GGCTTCTCATCTTTCATTAAAGAATGATTATGAAGTAACAGGACTTGAAC 958
BSNT_05843___ 953 TTGATGAGCTTG-TG-------TTTGCGGCA--TGGGATCACGAAGGTGT 992
|.||||..||.| || ||.|||||| .|||| |||
BPUM_3468___g 959 TAGATGCACTGGCTGAAGCCGCTTGGCGGCACCCGGGA--ACG------- 999
BSNT_05843___ 993 AATTGGATCAAGAATGACGGGAGCAGGCTTTGGCGGATGCACCATCAGCA 1042
|||||.||..|.|||||.||.||||||||||||||||||||.|||||||
BPUM_3468___g 1000 -ATTGGCTCCCGTATGACAGGTGCAGGCTTTGGCGGATGCACGATCAGCA 1048
BSNT_05843___ 1043 TTGTAAAAGATGAGTTC-GTTGATGAT--TTTATTCAGAAG--GTTGGAG 1087
||||.|||||.||| | |.||.|| | ||||| ||||| ..|||.|
BPUM_3468___g 1049 TTGTGAAAGAAGAG--CAGCTGGTG-TCATTTAT--AGAAGAAACTGGTG 1093
BSNT_05843___ 1088 ACAGATATCAAGAAAAAACAGGGCTCCGAGCGGACTTTTATGTCGC-GGA 1136
..|..||||||||.||||||||..|.|.|||...||||||....|| |||
BPUM_3468___g 1094 CGATGTATCAAGAGAAAACAGGCATTCAAGCCTCCTTTTACACAGCTGGA 1143
BSNT_05843___ 1137 TATCGGAGAGGGAGCGAGAGAACT----AAAGGGGGAGTGA-- 1173
||.||||..||.||.|||||||| ||.|.||.||||.
BPUM_3468___g 1144 -ATTGGAGGCGGCGCAAGAGAACTCACGAAGGAGGAAGTGTAA 1185
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